fastqc package doesn't list java as a dependency
Affects | Status | Importance | Assigned to | Milestone | |
---|---|---|---|---|---|
One Hundred Papercuts |
Fix Released
|
Low
|
Unassigned | ||
fastqc (Debian) |
Fix Released
|
Unknown
|
|||
fastqc (Ubuntu) |
Fix Released
|
Low
|
Unassigned |
Bug Description
$ fastqc 102517-
Can't exec "java": No such file or directory at /usr/bin/fastqc line 256.
Installing default-jre solves this problem.
ProblemType: Bug
DistroRelease: Ubuntu 15.04
Package: fastqc 0.11.2+dfsg-3
ProcVersionSign
Uname: Linux 3.19.0-13-generic x86_64
ApportVersion: 2.17-0ubuntu2
Architecture: amd64
CurrentDesktop: Unity
Date: Mon Apr 13 14:56:54 2015
Dependencies:
libcommons-
libjbzip2-java 0.9.1-3
libsam-java 1.113-1
InstallationDate: Installed on 2015-04-11 (1 days ago)
InstallationMedia: Ubuntu 15.04 "Vivid Vervet" - Beta amd64 (20150326)
PackageArchitec
SourcePackage: fastqc
UpgradeStatus: No upgrade log present (probably fresh install)
Changed in hundredpapercuts: | |
status: | New → Confirmed |
Changed in fastqc (Ubuntu): | |
importance: | Undecided → Low |
Changed in hundredpapercuts: | |
importance: | Undecided → Low |
Changed in fastqc (Debian): | |
status: | Unknown → New |
Changed in fastqc (Debian): | |
status: | New → Fix Released |
Thanks for taking your time to report this issue and help making Ubuntu better.
I get the same error message when I attempt to run fastqc after installing it. As you mention, it works after installing Java manually.
I have forwarded this bug report to Debian and attached a bug watch.