pdb2pqr version 1.7-2 FTBFS on armhf in precise

[Andreas Moog]

This is a semi-automatic report based on the latest archive rebuild results [1].
Apologies if it reaches you in error.

Excerpt from the buildlog:

cd . && :
 cd . && : --gnu
make[4]: Leaving directory `/build/buildd/pdb2pqr-1.7'
g++ -DPACKAGE_NAME=\"PDB2PQR\" -DPACKAGE_TARNAME=\"pdb2pqr\" -DPACKAGE_VERSION=\"1.7\" -DPACKAGE_STRING=\"PDB2PQR\ 1.7\" -DPACKAGE_BUGREPORT=\"<email address hidden>\" -DPACKAGE=\"PDB2PQR\" -DVERSION=\"1.7\" -I. -D_FORTIFY_SOURCE=2 -I/usr/include/python2.7 -I/usr/numpy/lib/python2.7/site-packages/numpy/core/include/numpy -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -c -o Algorithms.o Algorithms.cpp
In file included from /usr/include/python2.7/Python.h:8:0,
                 from Algorithms.cpp:40:
/usr/include/python2.7/pyconfig.h:1161:0: warning: "_POSIX_C_SOURCE" redefined [enabled by default]
/usr/include/features.h:164:0: note: this is the location of the previous definition
/usr/include/python2.7/pyconfig.h:1183:0: warning: "_XOPEN_SOURCE" redefined [enabled by default]
/usr/include/features.h:166:0: note: this is the location of the previous definition
g++ -o Algorithms.so -shared Algorithms.o
/usr/bin/ld: Algorithms.o: relocation R_ARM_THM_MOVW_ABS_NC against `__stack_chk_guard' can not be used when making a shared object; recompile with -fPIC
Algorithms.o: could not read symbols: Bad value
collect2: ld returned 1 exit status
make[3]: *** [Algorithms.so] Error 1
make[3]: Leaving directory `/build/buildd/pdb2pqr-1.7/pdb2pka/substruct'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/build/buildd/pdb2pqr-1.7/pdb2pka'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/build/buildd/pdb2pqr-1.7'
dh_auto_build: make -j1 returned exit code 2
make: *** [build] Error 2
dpkg-buildpackage: error: debian/rules build gave error exit status 2
******************************************************************************
Build finished at 20120214-1524
FAILED [dpkg-buildpackage died]

The full buidlog can be found at https://launchpad.net/ubuntu/+archive/test-rebuild-20120201/+build/3165720/+files/buildlog_ubuntu-precise-armhf.pdb2pqr_1.7-2_FAILEDTOBUILD.txt.gz.

[1] http://people.ubuntuwire.org/~wgrant/rebuild-ftbfs-test/test-rebuild-20120201-precise.html

[Andreas Moog (ampelbein)]

This is fixed in the current Ubuntu development release.
Precise is EoL, setting task to Won't Fix.