Bug #692248 “Please merge caret 5.6.1.3~dfsg.1-4 from Debian uns...” : Bugs : caret package : Ubuntu

David Futcher (bobbo) on 2010-12-19

Changed in caret (Ubuntu):
assignee:	nobody → David Futcher (bobbo)
status:	New → In Progress

Revision history for this message

David Futcher (bobbo) wrote on 2010-12-19:

#1

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Stalling on an FTBFS issue.

g++ -Wl,-O1 -Wl,--as-needed --no-undefined -lz -o caret5 CommunicatorClientAFNI.o CommunicatorClientFIV.o CommunicatorClientBase.o GuiAddCellsDialog.o GuiAlignSurfaceToStandardOrientationDialog.o GuiApplyDeformationMapDialog.o GuiAutomaticRotationDialog.o GuiAverageBorderDialog.o GuiAverageCoordinateDialog.o GuiBatchCommandDialog.o GuiBorderAttributesDialog.o GuiBorderComparisonDialog.o GuiBorderDrawUpdateDialog.o GuiBorderNamesListBoxSelectionDialog.o GuiBorderOperationsDialog.o GuiBorderProjectionDialog.o GuiBordersCreateInterpolatedDialog.o GuiBrainModelOpenGL.o GuiBrainModelOpenGLKeyEvent.o GuiBrainModelOpenGLMouseEvent.o GuiBrainModelOpenGLPopupMenu.o GuiBrainModelSelectionComboBox.o GuiBrainModelSurfaceSelectionComboBox.o GuiBrainModelViewingWindow.o GuiBrainSetAndModelSelectionControl.o GuiCaptureWindowImageDialog.o GuiCaretCommandDialog.o GuiCaretCommandScriptBuilderDialog.o GuiCaretCommandWidget.o GuiCaretTipsDialog.o GuiCategoryComboBox.o GuiCellAndFociAttributeAssignmentDialog.o GuiCellAndFociReportDialog.o GuiCellAttributesDialog.o GuiCellsOrFociProjectionDialog.o GuiChooseNodeAttributeColumnDialog.o GuiChooseSpecFileDialog.o GuiColorFileEditorDialog.o GuiColorFileEditorWidget.o GuiColorKeyDialog.o GuiColorSelectionDialog.o GuiCommaSeparatedValueFileEditor.o GuiCommunicatorClientConnectDialog.o GuiConnectivityDialog.o GuiContourAlignmentDialog.o GuiContourDrawDialog.o GuiContourReconstructionDialog.o GuiContourSectionControlDialog.o GuiContourSetScaleDialog.o GuiConvertDataFileDialog.o GuiCopySpecFileDialog.o GuiCurrentColoringToRgbPaintDialog.o GuiDataFileCommentDialog.o GuiDataFileImportOptionsDialog.o GuiDataFileMathDialog.o GuiDataFileOpenDialog.o GuiDataFileSaveDialog.o GuiDeformationFieldDialog.o GuiDeleteBordersByNameDialog.o GuiDisplayControlDialog.o GuiDisplayControlSurfaceOverlayWidget.o GuiDistortionDialog.o GuiDrawBorderDialog.o GuiFilesModified.o GuiFileDialogWithInstructions.o GuiFileSelectionButton.o GuiFileSelectionButtonAndLineEditWidget.o GuiFileSelectionListWidget.o GuiFociPalsProjectionDialog.o GuiFociSearchWidget.o GuiFociUncertaintyLimitsDialog.o GuiFlattenFullHemisphereDialog.o GuiFlattenHemisphereDialog.o GuiFlattenHemisphereInstructionsDialog.o GuiGenerateArealEstimationDialog.o GuiGenerateSulcalDepthDialog.o GuiGenerateSurfaceCurvatureDialog.o GuiGraphWidget.o GuiGraphWidgetDialog.o GuiHelpAssistantWindow.o GuiHelpViewerWindow.o GuiHistogramDisplayDialog.o GuiHtmlColorChooserDialog.o GuiHyperLinkTextBrowser.o GuiIdentifyDialog.o GuiImageEditorWindow.o GuiImageFormatComboBox.o GuiImageResizeDialog.o GuiImageViewingWindow.o GuiInflateAndSmoothFingersDialog.o GuiInflateSurfaceDialog.o GuiInterpolateSurfacesDialog.o GuiLoadedFileManagementDialog.o GuiMacOSXApplication.o GuiMainWindow.o GuiMainWindowAttributesActions.o GuiMainWindowAttributesMenu.o GuiMainWindowCommActions.o GuiMainWindowCommMenu.o GuiMainWindowFileActions.o GuiMainWindowFileMenu.o GuiMainWindowHelpActions.o GuiMainWindowHelpMenu.o GuiMainWindowLayersActions.o GuiMainWindowLayersMenu.o GuiMainWindowTimingActions.o GuiMainWindowTimingMenu.o GuiMainWindowSurfaceActions.o GuiMainWindowSurfaceMenu.o GuiMainWindowVo...

Stalling on an FTBFS issue.

g++ -Wl,-O1 -Wl,--as-needed --no-undefined -lz -o caret5 CommunicatorClientAFNI.o CommunicatorClientFIV.o CommunicatorClientBase.o GuiAddCellsDialog.o GuiAlignSurfaceToStandardOrientationDialog.o GuiApplyDeformationMapDialog.o GuiAutomaticRotationDialog.o GuiAverageBorderDialog.o GuiAverageCoordinateDialog.o GuiBatchCommandDialog.o GuiBorderAttributesDialog.o GuiBorderComparisonDialog.o GuiBorderDrawUpdateDialog.o GuiBorderNamesListBoxSelectionDialog.o GuiBorderOperationsDialog.o GuiBorderProjectionDialog.o GuiBordersCreateInterpolatedDialog.o GuiBrainModelOpenGL.o GuiBrainModelOpenGLKeyEvent.o GuiBrainModelOpenGLMouseEvent.o GuiBrainModelOpenGLPopupMenu.o GuiBrainModelSelectionComboBox.o GuiBrainModelSurfaceSelectionComboBox.o GuiBrainModelViewingWindow.o GuiBrainSetAndModelSelectionControl.o GuiCaptureWindowImageDialog.o GuiCaretCommandDialog.o GuiCaretCommandScriptBuilderDialog.o GuiCaretCommandWidget.o GuiCaretTipsDialog.o GuiCategoryComboBox.o GuiCellAndFociAttributeAssignmentDialog.o GuiCellAndFociReportDialog.o GuiCellAttributesDialog.o GuiCellsOrFociProjectionDialog.o GuiChooseNodeAttributeColumnDialog.o GuiChooseSpecFileDialog.o GuiColorFileEditorDialog.o GuiColorFileEditorWidget.o GuiColorKeyDialog.o GuiColorSelectionDialog.o GuiCommaSeparatedValueFileEditor.o GuiCommunicatorClientConnectDialog.o GuiConnectivityDialog.o GuiContourAlignmentDialog.o GuiContourDrawDialog.o GuiContourReconstructionDialog.o GuiContourSectionControlDialog.o GuiContourSetScaleDialog.o GuiConvertDataFileDialog.o GuiCopySpecFileDialog.o GuiCurrentColoringToRgbPaintDialog.o GuiDataFileCommentDialog.o GuiDataFileImportOptionsDialog.o GuiDataFileMathDialog.o GuiDataFileOpenDialog.o GuiDataFileSaveDialog.o GuiDeformationFieldDialog.o GuiDeleteBordersByNameDialog.o GuiDisplayControlDialog.o GuiDisplayControlSurfaceOverlayWidget.o GuiDistortionDialog.o GuiDrawBorderDialog.o GuiFilesModified.o GuiFileDialogWithInstructions.o GuiFileSelectionButton.o GuiFileSelectionButtonAndLineEditWidget.o GuiFileSelectionListWidget.o GuiFociPalsProjectionDialog.o GuiFociSearchWidget.o GuiFociUncertaintyLimitsDialog.o GuiFlattenFullHemisphereDialog.o GuiFlattenHemisphereDialog.o GuiFlattenHemisphereInstructionsDialog.o GuiGenerateArealEstimationDialog.o GuiGenerateSulcalDepthDialog.o GuiGenerateSurfaceCurvatureDialog.o GuiGraphWidget.o GuiGraphWidgetDialog.o GuiHelpAssistantWindow.o GuiHelpViewerWindow.o GuiHistogramDisplayDialog.o GuiHtmlColorChooserDialog.o GuiHyperLinkTextBrowser.o GuiIdentifyDialog.o GuiImageEditorWindow.o GuiImageFormatComboBox.o GuiImageResizeDialog.o GuiImageViewingWindow.o GuiInflateAndSmoothFingersDialog.o GuiInflateSurfaceDialog.o GuiInterpolateSurfacesDialog.o GuiLoadedFileManagementDialog.o GuiMacOSXApplication.o GuiMainWindow.o GuiMainWindowAttributesActions.o GuiMainWindowAttributesMenu.o GuiMainWindowCommActions.o GuiMainWindowCommMenu.o GuiMainWindowFileActions.o GuiMainWindowFileMenu.o GuiMainWindowHelpActions.o GuiMainWindowHelpMenu.o GuiMainWindowLayersActions.o GuiMainWindowLayersMenu.o GuiMainWindowTimingActions.o GuiMainWindowTimingMenu.o GuiMainWindowSurfaceActions.o GuiMainWindowSurfaceMenu.o GuiMainWindowVolumeActions.o GuiMainWindowVolumeMenu.o GuiMainWindowWindowActions.o GuiMainWindowWindowMenu.o GuiMapFmriAtlasDialog.o GuiMapFmriDialog.o GuiMapFmriMappingSet.o GuiMapFmriMetricInfo.o GuiMapFmriSpecFileTopoCoordDialog.o GuiMapFmriThresholdDialog.o GuiMapFmriVolume.o GuiMapStereotaxicFocusDialog.o GuiMetricModificationDialog.o GuiMetricsToRgbPaintDialog.o GuiModelSelectionControl.o GuiModelsEditorDialog.o GuiMorphingDialog.o GuiMorphingMeasurementsDialog.o GuiMouseModePopupMenu.o GuiMultipleInputDialog.o GuiMultiresolutionMorphingDialog.o GuiNameSelectionDialog.o GuiNodeAttributeColumnSelectionComboBox.o GuiNodeAttributeFileClearResetDialog.o GuiLoadNodeAttributeFileColumnSelectionDialog.o GuiPaintColumnNamesListBoxSelectionDialog.o GuiPaintNameEditorDialog.o GuiPaletteColorSelectionDialog.o GuiPaletteEditorDialog.o GuiParamsFileEditorDialog.o GuiPreferencesDialog.o GuiPreviousSpecFileComboBox.o GuiRecordingDialog.o GuiResectionDialog.o GuiSetTopologyDialog.o GuiSetViewDialog.o GuiShapeOrVectorsFromCoordinateSubtractionDialog.o GuiSectionControlDialog.o GuiShellCommandWindow.o GuiSmoothingDialog.o GuiSpecAndSceneFileCreationDialog.o GuiSpecFileCreationDialog.o GuiSpecFileDialog.o GuiSpeciesComboBox.o GuiStandardMeshDialog.o GuiStereotaxicSpaceComboBox.o GuiStructureComboBox.o GuiStudyCollectionFileEditorDialog.o GuiStudyInfoEditorWidget.o GuiStudyMetaDataFileEditorDialog.o GuiStudyMetaDataLinkCreationDialog.o GuiSumsDialog.o GuiSurfaceDeformationDialog.o GuiSurfaceInformationDialog.o GuiSurfaceRegionOfInterestDialog.o GuiSurfaceRegionOfInterestDialogOLD.o GuiSurfaceSpmTransformDialog.o GuiSurfaceToVolumeDialog.o GuiSurfaceTopologyReportDialog.o GuiSurfaceTypeComboBox.o GuiTextBrowser.o GuiTopologyTypeComboBox.o GuiToolBar.o GuiToolBarActions.o GuiTopologyFileComboBox.o GuiTransformationMatrixDialog.o GuiTransformationMatrixSelectionControl.o GuiUserViewSaveDialog.o GuiVectorFileComboBox.o GuiVocabularyFileEditorDialog.o GuiVolumeAttributesDialog.o GuiVolumeBiasCorrectionDialog.o GuiVolumeCreateDialog.o GuiVolumeFileOrientationComboBox.o GuiVolumeFileSelectionComboBox.o GuiVolumeFileTypeComboBox.o GuiVolumeHandleFinderDialog.o GuiVolumePaintEditorDialog.o GuiVolumeReconstructionDialog.o GuiVolumeRegionOfInterestDialog.o GuiVolumeRescaleDialog.o GuiVolumeResizingDialog.o GuiVolumeSegmentationEditorDialog.o GuiVolumeSelectionControl.o GuiVolumeSelectionDialog.o GuiVolumeSureFitSegmentationDialog.o GuiVolumeThresholdSegmentationDialog.o GuiVolumeTopologyReportDialog.o GuiVolumeTypeComboBox.o GuiVolumeVoxelDataTypeComboBox.o GuiZipSpecFileDialog.o main.o moc_CommunicatorClientAFNI.o moc_CommunicatorClientFIV.o moc_CommunicatorClientBase.o moc_GuiAddCellsDialog.o moc_GuiAlignSurfaceToStandardOrientationDialog.o moc_GuiApplyDeformationMapDialog.o moc_GuiAverageBorderDialog.o moc_GuiAverageCoordinateDialog.o moc_GuiAutomaticRotationDialog.o moc_GuiBatchCommandDialog.o moc_GuiBorderAttributesDialog.o moc_GuiBorderComparisonDialog.o moc_GuiBorderDrawUpdateDialog.o moc_GuiBorderNamesListBoxSelectionDialog.o moc_GuiBorderOperationsDialog.o moc_GuiBorderProjectionDialog.o moc_GuiBordersCreateInterpolatedDialog.o moc_GuiBrainModelOpenGL.o moc_GuiBrainModelOpenGLPopupMenu.o moc_GuiBrainModelSurfaceSelectionComboBox.o moc_GuiBrainModelViewingWindow.o moc_GuiBrainSetAndModelSelectionControl.o moc_GuiCaptureWindowImageDialog.o moc_GuiCaretCommandDialog.o moc_GuiCaretCommandScriptBuilderDialog.o moc_GuiCaretCommandWidget.o moc_GuiCaretTipsDialog.o moc_GuiCategoryComboBox.o moc_GuiCellAndFociAttributeAssignmentDialog.o moc_GuiCellAndFociReportDialog.o moc_GuiCellAttributesDialog.o moc_GuiCellsOrFociProjectionDialog.o moc_GuiChooseNodeAttributeColumnDialog.o moc_GuiChooseSpecFileDialog.o moc_GuiColorFileEditorDialog.o moc_GuiColorFileEditorWidget.o moc_GuiColorKeyDialog.o moc_GuiColorSelectionDialog.o moc_GuiCommaSeparatedValueFileEditor.o moc_GuiCommunicatorClientConnectDialog.o moc_GuiConnectivityDialog.o moc_GuiContourAlignmentDialog.o moc_GuiContourDrawDialog.o moc_GuiContourReconstructionDialog.o moc_GuiContourSectionControlDialog.o moc_GuiContourSetScaleDialog.o moc_GuiConvertDataFileDialog.o moc_GuiCopySpecFileDialog.o moc_GuiCurrentColoringToRgbPaintDialog.o moc_GuiDataFileCommentDialog.o moc_GuiDataFileImportOptionsDialog.o moc_GuiDataFileMathDialog.o moc_GuiDataFileOpenDialog.o moc_GuiDataFileSaveDialog.o moc_GuiDeformationFieldDialog.o moc_GuiDeleteBordersByNameDialog.o moc_GuiDisplayControlDialog.o moc_GuiDisplayControlSurfaceOverlayWidget.o moc_GuiDistortionDialog.o moc_GuiDrawBorderDialog.o moc_GuiFileDialogWithInstructions.o moc_GuiFileSelectionButton.o moc_GuiFileSelectionButtonAndLineEditWidget.o moc_GuiFileSelectionListWidget.o moc_GuiFociPalsProjectionDialog.o moc_GuiFociSearchWidget.o moc_GuiFociUncertaintyLimitsDialog.o moc_GuiFlattenFullHemisphereDialog.o moc_GuiFlattenHemisphereDialog.o moc_GuiFlattenHemisphereInstructionsDialog.o moc_GuiGenerateArealEstimationDialog.o moc_GuiGenerateSulcalDepthDialog.o moc_GuiGenerateSurfaceCurvatureDialog.o moc_GuiGraphWidget.o moc_GuiGraphWidgetDialog.o moc_GuiHelpAssistantWindow.o moc_GuiHelpViewerWindow.o moc_GuiHistogramDisplayDialog.o moc_GuiHyperLinkTextBrowser.o moc_GuiIdentifyDialog.o moc_GuiImageEditorWindow.o moc_GuiImageFormatComboBox.o moc_GuiImageResizeDialog.o moc_GuiImageViewingWindow.o moc_GuiInflateAndSmoothFingersDialog.o moc_GuiInflateSurfaceDialog.o moc_GuiInterpolateSurfacesDialog.o moc_GuiLoadedFileManagementDialog.o moc_GuiMacOSXApplication.o moc_GuiMainWindow.o moc_GuiMainWindowAttributesActions.o moc_GuiMainWindowAttributesMenu.o moc_GuiMainWindowCommActions.o moc_GuiMainWindowCommMenu.o moc_GuiMainWindowFileActions.o moc_GuiMainWindowFileMenu.o moc_GuiMainWindowHelpActions.o moc_GuiMainWindowHelpMenu.o moc_GuiMainWindowLayersActions.o moc_GuiMainWindowLayersMenu.o moc_GuiMainWindowSurfaceActions.o moc_GuiMainWindowSurfaceMenu.o moc_GuiMainWindowTimingActions.o moc_GuiMainWindowTimingMenu.o moc_GuiMainWindowVolumeActions.o moc_GuiMainWindowVolumeMenu.o moc_GuiMainWindowWindowActions.o moc_GuiMainWindowWindowMenu.o moc_GuiMapFmriAtlasDialog.o moc_GuiMapFmriDialog.o moc_GuiMapFmriSpecFileTopoCoordDialog.o moc_GuiMapFmriThresholdDialog.o moc_GuiMapStereotaxicFocusDialog.o moc_GuiMetricModificationDialog.o moc_GuiMetricsToRgbPaintDialog.o moc_GuiModelSelectionControl.o moc_GuiModelsEditorDialog.o moc_GuiMorphingDialog.o moc_GuiMorphingMeasurementsDialog.o moc_GuiMouseModePopupMenu.o moc_GuiMultipleInputDialog.o moc_GuiMultiresolutionMorphingDialog.o moc_GuiNameSelectionDialog.o moc_GuiNodeAttributeColumnSelectionComboBox.o moc_GuiNodeAttributeFileClearResetDialog.o moc_GuiLoadNodeAttributeFileColumnSelectionDialog.o moc_GuiPaintColumnNamesListBoxSelectionDialog.o moc_GuiPaintNameEditorDialog.o moc_GuiPaletteColorSelectionDialog.o moc_GuiPaletteEditorDialog.o moc_GuiParamsFileEditorDialog.o moc_GuiPreferencesDialog.o moc_GuiPreviousSpecFileComboBox.o moc_GuiRecordingDialog.o moc_GuiResectionDialog.o moc_GuiSectionControlDialog.o moc_GuiSetTopologyDialog.o moc_GuiSetViewDialog.o moc_GuiShapeOrVectorsFromCoordinateSubtractionDialog.o moc_GuiShellCommandWindow.o moc_GuiSmoothingDialog.o moc_GuiSpecAndSceneFileCreationDialog.o moc_GuiSpecFileCreationDialog.o moc_GuiSpecFileDialog.o moc_GuiSpeciesComboBox.o moc_GuiStandardMeshDialog.o moc_GuiStereotaxicSpaceComboBox.o moc_GuiStructureComboBox.o moc_GuiStudyCollectionFileEditorDialog.o moc_GuiStudyInfoEditorWidget.o moc_GuiStudyMetaDataFileEditorDialog.o moc_GuiStudyMetaDataLinkCreationDialog.o moc_GuiSumsDialog.o moc_GuiSurfaceDeformationDialog.o moc_GuiSurfaceInformationDialog.o moc_GuiSurfaceRegionOfInterestDialog.o moc_GuiSurfaceRegionOfInterestDialogOLD.o moc_GuiSurfaceSpmTransformDialog.o moc_GuiSurfaceToVolumeDialog.o moc_GuiSurfaceTopologyReportDialog.o moc_GuiSurfaceTypeComboBox.o moc_GuiTextBrowser.o moc_GuiToolBar.o moc_GuiToolBarActions.o moc_GuiTopologyTypeComboBox.o moc_GuiTransformationMatrixDialog.o moc_GuiTransformationMatrixSelectionControl.o moc_GuiUserViewSaveDialog.o moc_GuiVocabularyFileEditorDialog.o moc_GuiVolumeAttributesDialog.o moc_GuiVolumeBiasCorrectionDialog.o moc_GuiVolumeCreateDialog.o moc_GuiVolumeFileTypeComboBox.o moc_GuiVolumeHandleFinderDialog.o moc_GuiVolumePaintEditorDialog.o moc_GuiVolumeReconstructionDialog.o moc_GuiVolumeRegionOfInterestDialog.o moc_GuiVolumeRescaleDialog.o moc_GuiVolumeResizingDialog.o moc_GuiVolumeSegmentationEditorDialog.o moc_GuiVolumeSelectionControl.o moc_GuiVolumeSureFitSegmentationDialog.o moc_GuiVolumeThresholdSegmentationDialog.o moc_GuiVolumeTopologyReportDialog.o moc_GuiVolumeTypeComboBox.o moc_GuiVolumeVoxelDataTypeComboBox.o moc_GuiZipSpecFileDialog.o    -L/usr/lib -L/usr/X11R6/lib -L/usr/plugins/imageformats -L/usr/lib -L../caret_command_operations -lCaretCommandOperations -L../caret_brain_set -lCaretBrainSet -L../caret_files -lCaretFiles -L../caret_uniformize -lCaretUniformize -L../caret_statistics -lCaretStatistics -L../caret_common -lCaretCommon -L../caret_widgets -lCaretWidgets -lvtkRendering -lvtkGenericFiltering -lvtkImaging -lvtkGraphics -lvtkIO -lvtkFiltering -lvtkCommon -L/usr/lib -lqwt-qt4 -L/usr/lib -lminc2 -lnetcdf -ldl -lQtAssistantClient -lpthread -L/usr/lib/qt4/plugins/imageformats -lqgif -lqjpeg -lqtiff -lQtXml -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lGLU -lGL 
/usr/bin/ld: GuiRecordingDialog.o: undefined reference to symbol 'gzclose'
/usr/bin/ld: note: 'gzclose' is defined in DSO /usr/lib/libz.so so try adding it to the linker command line
/usr/lib/libz.so: could not read symbols: Invalid operation
collect2: ld returned 1 exit status
make[1]: *** [caret5] Error 1
make[1]: Leaving directory `/tmp/buildd/caret-5.6.1.3~dfsg.1/caret'
make: *** [build-caret] Error 2
dpkg-buildpackage: error: debian/rules build gave error exit status 2

Changed in caret (Ubuntu):
assignee:	David Futcher (bobbo) → nobody
status:	In Progress → Triaged

Revision history for this message

Scott Kitterman (kitterman) wrote on 2010-12-20:

#2

Testing a fix for that now.

Revision history for this message

Scott Kitterman (kitterman) wrote on 2010-12-20:

#3

There was no patch attached and since the merge was pretty trivial once I got the FTBFS fix done, I've gone ahead and uploaded.

Changed in caret (Ubuntu):
status:	Triaged → Fix Released

Ubuntu
caret package

Please merge caret 5.6.1.3~dfsg.1-4 from Debian unstable (main)

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Ubuntucaret package

Please merge caret 5.6.1.3~dfsg.1-4 from Debian unstable (main)

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Ubuntu
caret package