Ubuntu
openjdk-6 package

Crash of R with JGR when making graphs

Bug #675905 reported by Katharina Manderscheid on 2010-11-16

This bug affects 1 person

Affects		Status	Importance	Assigned to	Milestone
	openjdk-6 (Ubuntu)	New	Undecided	Unassigned

Bug Description

I am using Linux Mint Isoldora 9 and R with JGR. Since the last update of R to 2.12 it crashes whenever I want to produce a graph. In the terminal I get this:

# A fatal error has been detected by the Java Runtime Environment:
#
# SIGSEGV (0xb) at pc=0x00000000, pid=9283, tid=3029658480
#
# JRE version: 6.0_18-b18
# Java VM: OpenJDK Client VM (16.0-b13 mixed mode, sharing linux-x86 )
# Derivative: IcedTea6 1.8.2
# Distribution: Ubuntu 10.04.1 LTS, package 6b18-1.8.2-4ubuntu2
# Problematic frame:
# C 0x00000000
#
# An error report file with more information is saved as:
# /home/kat/hs_err_pid9283.log

and this is the error log file:

--------------- T H R E A D ---------------

Current thread (0x0a035400): JavaThread "Thread-7" [_thread_in_native, id=9305, stack(0xb48fe000,0xb494f000)]

siginfo:si_signo=SIGSEGV: si_errno=0, si_code=1 (SEGV_MAPERR), si_addr=0x00000000

Registers:
EAX=0x0a8c7440, EBX=0x0837bff4, ECX=0xb4949aa8, EDX=0xb4079d98
ESP=0xb4949a1c, EBP=0xb4949a68, ESI=0x08374605, EDI=0x0a8c7440
EIP=0x00000000, CR2=0x00000000, EFLAGS=0x00010297

Top of Stack: (sp=0xb4949a1c)
0xb4949a1c: 081a845c 0a8c7440 b4949aa8 b4079d98
0xb4949a2c: 00000002 00000005 0810b2a4 0027bc0c
0xb4949a3c: 08101000 0aae48f0 00000000 00000000
0xb4949a4c: 00000000 b4949bd8 00d33230 ffffffff
0xb4949a5c: 0837bff4 b4476f08 b4949aa8 b4949bd8
0xb4949a6c: 081f027d 08374604 ffffffff b4949aa8
0xb4949a7c: b4476f08 0810b094 0a02ccc4 82ff5c7c
0xb4949a8c: 407668c2 00000010 0a02bc10 00000000

Instructions: (pc=0x00000000)
0xfffffff0:

Stack: [0xb48fe000,0xb494f000], sp=0xb4949a1c, free space=12eb49493c4k
Java frames: (J=compiled Java code, j=interpreted, Vv=VM code)
j org.rosuda.JRI.Rengine.rniRunMainLoop()V+0
j org.rosuda.JRI.Rengine.run()V+96
v ~StubRoutines::call_stub

--------------- P R O C E S S ---------------

Java Threads: ( => current thread )
  0xb4097c00 JavaThread "Thread-11" [_thread_blocked, id=9311, stack(0xb4763000,0xb47b4000)]
  0x0aae3000 JavaThread "Thread-10" [_thread_blocked, id=9310, stack(0xb455e000,0xb45af000)]
  0x0ad08c00 JavaThread "Thread-9" [_thread_blocked, id=9309, stack(0xb45af000,0xb4600000)]
=>0x0a035400 JavaThread "Thread-7" [_thread_in_native, id=9305, stack(0xb48fe000,0xb494f000)]
  0x0a02a000 JavaThread "Thread-6" [_thread_blocked, id=9304, stack(0xb49af000,0xb4a00000)]
  0x09f8f000 JavaThread "TimerQueue" daemon [_thread_blocked, id=9303, stack(0xb4b23000,0xb4b74000)]
  0x09ed5400 JavaThread "AWT-EventQueue-0" [_thread_in_native, id=9301, stack(0xb4c00000,0xb4c51000)]
  0x09ee2c00 JavaThread "AWT-Shutdown" [_thread_blocked, id=9300, stack(0xb4c51000,0xb4ca2000)]
  0x09ec3000 JavaThread "Timer-0" daemon [_thread_blocked, id=9298, stack(0xb4ed0000,0xb4f21000)]
  0x09dc2000 JavaThread "AWT-XAWT" daemon [_thread_in_native, id=9293, stack(0xb4f73000,0xb4fc4000)]
  0x09d8f800 JavaThread "Java2D Disposer" daemon [_thread_blocked, id=9292, stack(0xb5010000,0xb5061000)]
  0x09cd6000 JavaThread "Low Memory Detector" daemon [_thread_blocked, id=9290, stack(0xb5102000,0xb5153000)]
  0x09cd4000 JavaThread "CompilerThread0" daemon [_thread_blocked, id=9289, stack(0xb5153000,0xb51d4000)]
  0x09cd2400 JavaThread "Signal Dispatcher" daemon [_thread_blocked, id=9288, stack(0xb51d4000,0xb5225000)]
  0x09cc9800 JavaThread "Finalizer" daemon [_thread_blocked, id=9287, stack(0xb526b000,0xb52bc000)]
  0x09cc7c00 JavaThread "Reference Handler" daemon [_thread_blocked, id=9286, stack(0xb52bc000,0xb530d000)]
  0x09c9b000 JavaThread "main" [_thread_blocked, id=9284, stack(0xb77e2000,0xb7833000)]

Other Threads:
0x09cc6400 VMThread [stack: 0xb530d000,0xb538e000] [id=9285]
0x09cd9800 WatcherThread [stack: 0xb5081000,0xb5102000] [id=9291]

VM state:not at safepoint (normal execution)

VM Mutex/Monitor currently owned by a thread: None

Heap
def new generation total 8832K, used 2395K [0x6f8c0000, 0x70250000, 0x7a360000)
  eden space 7872K, 30% used [0x6f8c0000, 0x6fb16f18, 0x70070000)
  from space 960K, 0% used [0x70070000, 0x70070000, 0x70160000)
  to space 960K, 0% used [0x70160000, 0x70160000, 0x70250000)
tenured generation total 19528K, used 11715K [0x7a360000, 0x7b672000, 0x8f8c0000)
   the space 19528K, 59% used [0x7a360000, 0x7aed0e58, 0x7aed1000, 0x7b672000)
compacting perm gen total 12288K, used 5508K [0x8f8c0000, 0x904c0000, 0x938c0000)
   the space 12288K, 44% used [0x8f8c0000, 0x8fe211e0, 0x8fe21200, 0x904c0000)
    ro space 10240K, 72% used [0x938c0000, 0x9400a9f8, 0x9400aa00, 0x942c0000)
    rw space 12288K, 60% used [0x942c0000, 0x949fb0d0, 0x949fb200, 0x94ec0000)

Dynamic libraries:
00110000-00263000 r-xp 00000000 08:03 265732 00263000-00264000 ---p 00153000 08:03 265732 00264000-00266000 r--p 00153000 08:03 265732 00266000-00267000 rw-p 00155000 08:03 265732 00267000-0026a000 rw-p 00000000 00:00 0026a000-0028e000 r-xp 00000000 08:03 265736 0028e000-0028f000 r--p 00023000 08:03 265736 0028f000-00290000 rw-p 00024000 08:03 265736 00290000-00294000 r-xp 00000000 08:03 136240 00294000-00295000 r--p 00003000 08:03 136240 00295000-00296000 rw-p 00004000 08:03 136240 00296000-00298000 r-xp 00000000 08:03 136199 00298000-00299000 r--p 00001000 08:03 136199 00299000-0029a000 rw-p 00002000 08:03 136199 0029a000-0029e000 r-xp 00000000 08:03 136210 0029e000-0029f000 r--p 00003000 08:03 136210 0029f000-002a0000 rw-p 00004000 08:03 136210 002a1000-002a4000 r-xp 00000000 08:03 535609 002a4000-002a5000 r--p 00003000 08:03 535609 002a5000-002a6000 rw-p 00004000 08:03 535609 002a6000-002b9000 r-xp 00000000 08:03 265738 002b9000-002ba000 r--p 00012000 08:03 265738 002ba000-002bb000 rw-p 00013000 08:03 265738 002bb000-002bd000 rw-p 00000000 00:00 002bd000-00342000 r-xp 00000000 08:03 535612 00342000-00343000 r--p 00084000 08:03 535612 00343000-00349000 rw-p 00085000 08:03 535612 00349000-0036e000 rw-p 00000000 00:00 0036e000-003b3000 r-xp 00000000 08:03 535703 003b3000-003b4000 r--p 00045000 08:03 535703 003b4000-003b6000 rw-p 00046000 08:03 535703 003b6000-003b7000 rw-p 00000000 00:00 003b7000-003cf000 r-xp 00000000 08:03 137384 003cf000-003d0000 r--p 00017000 08:03 137384 003d0000-003d1000 rw-p 00018000 08:03 137384 003d1000-003ee000 r-xp 00000000 08:03 261716 003ee000-003ef000 r--p 0001c000 08:03 261716 003ef000-003f0000 rw-p 0001d000 08:03 261716 003f0000-003f2000 r-xp 00000000 08:03 136222 003f2000-003f3000 r--p 00001000 08:03 136222 003f3000-003f4000 rw-p 00002000 08:03 136222 003f4000-003fa000 r-xp 00000000 08:03 136232 003fa000-003fb000 r--p 00005000 08:03 136232 003fb000-003fc000 rw-p 00006000 08:03 136232 003fc000-00406000 r-xp 00000000 08:03 137101 00406000-00407000 r--p 00009000 08:03 137101 00407000-00408000 rw-p 0000a000 08:03 137101 00408000-0040b000 r-xp 00000000 08:03 133227 0040b000-0040c000 r--p 00002000 08:03 133227 0040c000-0040d000 rw-p 00003000 08:03 133227 0040d000-00410000 r-xp 00000000 08:03 137380 00410000-00411000 r--p 00002000 08:03 137380 00411000-00412000 rw-p 00003000 08:03 137380 00412000-00425000 r-xp 00000000 08:03 261832 00425000-00426000 r--p 00012000 08:03 261832 00426000-00427000 rw-p 00013000 08:03 261832 00427000-00467000 r-xp 00000000 08:03 137099 00467000-00468000 ---p 00040000 08:03 137099 00468000-00469000 r--p 00040000 08:03 137099 00469000-0046a000 rw-p 00041000 08:03 137099 0046a000-0046e000 r-xp 00000000 08:03 133241 0046e000-0046f000 r--p 00003000 08:03 133241 0046f000-00470000 rw-p 00004000 08:03 133241 00470000-0047c000 r-xp 00000000 08:03 136220 0047c000-0047d000 r--p 0000c000 08:03 136220 0047d000-0047e000 rw-p 0000d000 08:03 136220 0047e000-004c2000 r-xp 00000000 08:03 535614 004c2000-004c4000 r--p 00043000 08:03 535614 004c4000-004c5000 rw-p 00045000 08:03 535614 004c5000-004ca000 rw-p 00000000 00:00 004ca000-004f8000 r-xp 00000000 08:03 136550 004f8000-004f9000 r--p 0002d000 08:03 136550 004f9000-004fa000 rw-p 0002e000 08:03 136550 004fb000-00503000 r-xp 00000000 08:03 265743 00503000-00504000 r--p 00007000 08:03 265743 00504000-00505000 rw-p 00008000 08:03 265743 00505000-00519000 r-xp 00000000 08:03 136447 00519000-0051a000 r--p 00013000 08:03 136447 0051a000-0051b000 rw-p 00014000 08:03 136447 0051b000-00521000 r-xp 00000000 08:03 137382 00521000-00522000 r--p 00005000 08:03 137382 00522000-00523000 rw-p 00006000 08:03 137382 00523000-00527000 r-xp 00000000 08:03 141422 00527000-00528000 ---p 00004000 08:03 141422 00528000-00529000 r--p 00004000 08:03 141422 00529000-0052a000 rw-p 00005000 08:03 141422 0052a000-0052d000 r-xp 00000000 08:03 136351 0052d000-0052e000 r--p 00003000 08:03 136351 0052e000-0052f000 rw-p 00004000 08:03 136351 00531000-00539000 r-xp 00000000 08:03 136234 00539000-0053a000 r--p 00007000 08:03 136234 0053a000-0053b000 rw-p 00008000 08:03 136234 0053b000-00578000 r-xp 00000000 08:03 133223 00578000-00579000 r--p 0003c000 08:03 133223 00579000-0057a000 rw-p 0003d000 08:03 133223 0057a000-0058a000 r-xp 00000000 08:03 265747 0058a000-0058b000 r--p 00010000 08:03 265747 0058b000-0058c000 rw-p 00011000 08:03 265747 0058c000-0058e000 rw-p 00000000 00:00 0058e000-00595000 r-xp 00000000 08:03 137346 00595000-00596000 r--p 00006000 08:03 137346 00596000-00597000 rw-p 00007000 08:03 137346 00597000-0059e000 r-xp 00000000 08:03 265748 0059e000-0059f000 r--p 00006000 08:03 265748 0059f000-005a0000 rw-p 00007000 08:03 265748 005a0000-005c3000 r-xp 00000000 08:03 281362 005c3000-005c4000 r--p 00022000 08:03 281362 005c4000-005c5000 rw-p 00023000 08:03 281362 005c5000-005d3000 r-xp 00000000 08:03 136353 005d3000-005d4000 r--p 0000d000 08:03 136353 005d4000-005d5000 rw-p 0000e000 08:03 136353 005d5000-005da000 r-xp 00000000 08:03 137066 005da000-005db000 r--p 00004000 08:03 137066 005db000-005dc000 rw-p 00005000 08:03 137066 005dd000-005e5000 r-xp 00000000 08:03 136206 005e5000-005e6000 r--p 00007000 08:03 136206 005e6000-005e7000 rw-p 00008000 08:03 136206 005e7000-00600000 r-xp 00000000 08:03 261799 00600000-00601000 r--p 00018000 08:03 261799 00601000-00602000 rw-p 00019000 08:03 261799 00602000-00604000 r-xp 00000000 08:03 145774 00604000-00605000 r--p 00001000 08:03 145774 00605000-00606000 rw-p 00002000 08:03 145774 00606000-0062a000 r-xp 00000000 08:03 535621 0062a000-0062b000 r--p 00023000 08:03 535621 0062b000-0062d000 rw-p 00024000 08:03 535621 0062d000-0065c000 r-xp 00000000 08:03 261775 0065c000-0065d000 r--p 0002e000 08:03 261775 0065d000-0065e000 rw-p 0002f000 08:03 261775 0065e000-0065f000 r-xp 00000000 08:03 673164 0065f000-00660000 r--p 00000000 08:03 673164 00660000-00661000 rw-p 00001000 08:03 673164 00661000-00664000 r-xp 00000000 08:03 536677 00664000-00665000 r--p 00002000 08:03 536677 00665000-00666000 rw-p 00003000 08:03 536677 00666000-0067b000 r-xp 00000000 08:03 265746 0067b000-0067c000 r--p 00014000 08:03 265746 0067c000-0067d000 rw-p 00015000 08:03 265746 0067d000-0067f000 rw-p 00000000 00:00 0067f000-006f0000 r-xp 00000000 08:03 137992 006f0000-006f4000 r--p 00070000 08:03 137992 006f4000-006f5000 rw-p 00074000 08:03 137992 006f7000-006f8000 r-xp 00000000 00:00 0 006f8000-00811000 r-xp 00000000 08:03 136195 00811000-00812000 r--p 00118000 08:03 136195 00812000-00814000 rw-p 00119000 08:03 136195 00814000-00815000 rw-p 00000000 00:00 00815000-008a8000 r-xp 00000000 08:03 135071 008a8000-008aa000 r--p 00093000 08:03 135071 008aa000-008ab000 rw-p 00095000 08:03 135071 008ab000-008b2000 r-xp 00000000 08:03 136951 008b2000-008b3000 r--p 00006000 08:03 136951 008b3000-008b4000 rw-p 00007000 08:03 136951 008b7000-008c3000 r-xp 00000000 08:03 535637 008c3000-008c4000 r--p 0000b000 08:03 535637 008c4000-008c5000 rw-p 0000c000 08:03 535637 008c5000-0093c000 r-xp 00000000 08:03 136343 0093c000-0093e000 r--p 00076000 08:03 136343 0093e000-0093f000 rw-p 00078000 08:03 136343 0093f000-00948000 r-xp 00000000 08:03 535625 00948000-00949000 r--p 00008000 08:03 535625 00949000-0094a000 rw-p 00009000 08:03 535625 0094b000-00964000 r-xp 00000000 08:03 134842 00964000-00965000 ---p 00019000 08:03 134842 00965000-00966000 r--p 00019000 08:03 134842 00966000-00967000 rw-p 0001a000 08:03 134842 00967000-00974000 r-xp 00000000 08:03 137285 00974000-00975000 r--p 0000c000 08:03 137285 00975000-00976000 rw-p 0000d000 08:03 137285 00976000-00978000 r-xp 00000000 08:03 536159 00978000-00979000 r--p 00001000 08:03 536159 00979000-0097a000 rw-p 00002000 08:03 536159 0097a000-00984000 r-xp 00000000 08:03 265741 00984000-00985000 r--p 00009000 08:03 265741 00985000-00986000 rw-p 0000a000 08:03 265741 00986000-009aa000 r-xp 00000000 08:03 261709 009aa000-009ac000 r--p 00024000 08:03 261709 009ac000-009ad000 rw-p 00026000 08:03 261709 009ad000-009af000 r-xp 00000000 08:03 265735 009af000-009b0000 r--p 00001000 08:03 265735 009b0000-009b1000 rw-p 00002000 08:03 265735 009b1000-009d8000 r-xp 00000000 08:03 137342 009d8000-009d9000 r--p 00026000 08:03 137342 009d9000-009da000 rw-p 00027000 08:03 137342 009da000-00a00000 r-xp 00000000 08:03 141380 00a00000-00a01000 r--p 00025000 08:03 141380 00a01000-00a02000 rw-p 00026000 08:03 141380 00a02000-00a06000 r-xp 00000000 08:03 136214 00a06000-00a07000 r--p 00003000 08:03 136214 00a07000-00a08000 rw-p 00004000 08:03 136214 00a08000-00a1c000 r-xp 00000000 08:03 535631 00a1c000-00a1d000 r--p 00013000 08:03 535631 00a1d000-00a1e000 rw-p 00014000 08:03 535631 00a1e000-00a26000 r-xp 00000000 08:03 681578 00a26000-00a27000 r--p 00007000 08:03 681578 00a27000-00a28000 rw-p 00008000 08:03 681578 00a28000-00a36000 r-xp 00000000 08:03 136212 00a36000-00a37000 r--p 0000d000 08:03 136212 00a37000-00a38000 rw-p 0000e000 08:03 136212 00a38000-00a8f000 r-xp 00000000 08:03 137129 00a8f000-00a91000 r--p 00057000 08:03 137129 00a91000-00a92000 rw-p 00059000 08:03 137129 00a93000-00a99000 r-xp 00000000 08:03 265739 00a99000-00a9a000 r--p 00006000 08:03 265739 00a9a000-00a9b000 rw-p 00007000 08:03 265739 00a9b000-00aba000 r-xp 00000000 08:03 136909 00aba000-00abb000 r--p 0001e000 08:03 136909 00abb000-00abc000 rw-p 0001f000 08:03 136909 00abc000-00ac3000 r-xp 00000000 08:03 536430 00ac3000-00ac4000 r--p 00006000 08:03 536430 00ac4000-00ac5000 rw-p 00007000 08:03 536430 00ac5000-00ad3000 r-xp 00000000 08:03 672377 00ad3000-00ad4000 r--p 0000d000 08:03 672377 00ad4000-00ad5000 rw-p 0000e000 08:03 672377 00ad5000-00ad9000 r-xp 00000000 08:03 685107 00ad9000-00ada000 r--p 00003000 08:03 685107 00ada000-00adb000 rw-p 00004000 08:03 685107 00add000-00ae4000 r-xp 00000000 08:03 535639 00ae4000-00ae5000 r--p 00006000 08:03 535639 00ae5000-00ae6000 rw-p 00007000 08:03 535639 00ae6000-00b59000 r-xp 00000000 08:03 136449 00b59000-00b5a000 ---p 00073000 08:03 136449 00b5a000-00b5b000 r--p 00073000 08:03 136449 00b5b000-00b5c000 rw-p 00074000 08:03 136449 00b5c000-00b5d000 rw-p 00000000 00:00 00b5d000-00b61000 r-xp 00000000 08:03 671260 00b61000-00b62000 r--p 00003000 08:03 671260 00b62000-00b63000 rw-p 00004000 08:03 671260 00b63000-00b6b000 rw-p 00000000 00:00 00b6b000-00b6e000 r-xp 00000000 08:03 533819 00b6e000-00b6f000 r--p 00002000 08:03 533819 00b6f000-00b70000 rw-p 00003000 08:03 533819 00b70000-00b73000 r-xp 00000000 08:03 533609 00b73000-00b74000 r--p 00002000 08:03 533609 00b74000-00b75000 rw-p 00003000 08:03 533609 00b75000-00b8d000 r-xp 00000000 08:03 135072 00b8d000-00b8e000 r--p 00017000 08:03 135072 00b8e000-00b8f000 rw-p 00018000 08:03 135072 00b8f000-00baf000 r-xp 00000000 08:03 136955 00baf000-00bb0000 r--p 0001f000 08:03 136955 00bb0000-00bb1000 rw-p 00020000 08:03 136955 00bb2000-00bba000 r-xp 00000000 08:03 136562 00bba000-00bbb000 r--p 00007000 08:03 136562 00bbb000-00bbc000 rw-p 00008000 08:03 136562 00bbc000-00be1000 r-xp 00000000 08:03 536370 00be1000-00be2000 r--p 00024000 08:03 536370 00be2000-00be3000 rw-p 00025000 08:03 536370 00be4000-00be6000 r-xp 00000000 08:03 136208 00be6000-00be7000 r--p 00001000 08:03 136208 00be7000-00be8000 rw-p 00002000 08:03 136208 00be8000-00bf3000 r-xp 00000000 08:03 679234 00bf3000-00bf4000 r--p 0000a000 08:03 679234 00bf4000-00bf5000 rw-p 0000b000 08:03 679234 00bf5000-00bfc000 r-xp 00000000 08:03 535632 00bfc000-00bfd000 r--p 00006000 08:03 535632 00bfd000-00bfe000 rw-p 00007000 08:03 535632 00bfe000-00c1b000 r-xp 00000000 08:03 536642 00c1b000-00c1c000 ---p 0001d000 08:03 536642 00c1c000-00c1d000 r--p 0001d000 08:03 536642 00c1d000-00c1e000 rw-p 0001e000 08:03 536642 00c2b000-00c50000 r-xp 00000000 08:03 137103 00c50000-00c51000 r--p 00024000 08:03 137103 00c51000-00c52000 rw-p 00025000 08:03 137103 00c52000-00c60000 r-xp 00000000 08:03 536720 00c60000-00c61000 r--p 0000d000 08:03 536720 00c61000-00c62000 rw-p 0000e000 08:03 536720 00c62000-00c72000 rw-p 00000000 00:00 00c75000-00c77000 r-xp 00000000 08:03 136204 00c77000-00c78000 r--p 00001000 08:03 136204 00c78000-00c79000 rw-p 00002000 08:03 136204 00c79000-00ca7000 r-xp 00000000 08:03 535628 00ca7000-00ca8000 r--p 0002d000 08:03 535628 00ca8000-00ca9000 rw-p 0002e000 08:03 535628 00ca9000-00cab000 rw-p 00000000 00:00 00cbb000-00cc2000 r-xp 00000000 08:03 535638 00cc2000-00cc3000 r--p 00006000 08:03 535638 00cc3000-00cc4000 rw-p 00007000 08:03 535638 00cc4000-00cf3000 r-xp 00000000 08:03 261794 00cf3000-00cf4000 r--p 0002e000 08:03 261794 00cf4000-00cf7000 rw-p 0002f000 08:03 261794 00cf7000-00cf8000 rw-p 00000000 00:00 00cf8000-00d0c000 r-xp 00000000 08:03 685071 00d0c000-00d0d000 r--p 00013000 08:03 685071 00d0d000-00d0e000 rw-p 00014000 08:03 685071 00d20000-00d3b000 r-xp 00000000 08:03 265724 00d3b000-00d3c000 r--p 0001a000 08:03 265724 00d3c000-00d3d000 rw-p 0001b000 08:03 265724 00d3d000-01150000 r-xp 00000000 08:03 535606 01150000-01167000 r--p 00412000 08:03 535606 01167000-01174000 rw-p 00429000 08:03 535606 01174000-01590000 rw-p 00000000 00:00 01590000-0159c000 r-xp 00000000 08:03 679419 0159c000-0159d000 r--p 0000b000 08:03 679419 0159d000-0159e000 rw-p 0000c000 08:03 679419 0159e000-01c0f000 rw-p 00000000 00:00 02c4a000-02ce4000 r-xp 00000000 08:03 133252 02ce4000-02ce5000 ---p 0009a000 08:03 133252 02ce5000-02ce6000 r--p 0009a000 08:03 133252 02ce6000-02ce7000 rw-p 0009b000 08:03 133252 02ce7000-02ce8000 rw-p 00000000 00:00 03c5a000-03cd5000 r-xp 00000000 08:03 142334 03cd5000-03cd6000 r--p 0007a000 08:03 142334 03cd6000-03cd7000 rw-p 0007b000 08:03 142334 03df1000-041be000 r-xp 00000000 08:03 135070 041be000-041c2000 r--p 003cd000 08:03 135070 041c2000-041c4000 rw-p 003d1000 08:03 135070 041c4000-041c6000 rw-p 00000000 00:00 063b5000-063e9000 r-xp 00000000 08:03 261736 063e9000-063ea000 ---p 00034000 08:03 261736 063ea000-063ec000 r--p 00034000 08:03 261736 063ec000-063ed000 rw-p 00036000 08:03 261736 06a87000-06b4f000 r-xp 00000000 08:03 274242 06b4f000-06b50000 r--p 000c7000 08:03 274242 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/lib/tls/i686/cmov/libnss_compat-2.11.1.so
/usr/lib/libjpeg.so.62.0.0
/usr/lib/libjpeg.so.62.0.0
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/home/kat/R/i486-pc-linux-gnu-library/2.10/rJava/libs/rJava.so
/home/kat/R/i486-pc-linux-gnu-library/2.10/rJava/libs/rJava.so
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/usr/lib/libdirectfb-1.2.so.0.8.0
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0
/home/kat/R/i486-pc-linux-gnu-library/2.10/JavaGD/libs/JavaGD.so
/home/kat/R/i486-pc-linux-gnu-library/2.10/JavaGD/libs/JavaGD.so
/home/kat/R/i486-pc-linux-gnu-library/2.10/JavaGD/libs/JavaGD.so
0
/usr/lib/R/library/nnet/libs/nnet.so
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/usr/lib/libXdamage.so.1.1.0
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/home/kat/R/i486-pc-linux-gnu-library/2.10/colorspace/libs/colorspace.so
/home/kat/R/i486-pc-linux-gnu-library/2.10/colorspace/libs/colorspace.so
/usr/lib/jvm/java-6-openjdk/jre/lib/i386/libnio.so
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/usr/lib/libpangoft2-1.0.so.0.2800.0
/usr/lib/R/modules/internet.so
/usr/lib/R/modules/internet.so
/usr/lib/R/modules/internet.so
0
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/usr/lib/jvm/java-6-openjdk/jre/lib/i386/liblcms.so
/usr/lib/jvm/java-6-openjdk/jre/lib/i386/liblcms.so
/usr/lib/jvm/java-6-openjdk/jre/lib/i386/liblcms.so
0
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/usr/lib/jvm/java-6-openjdk/jre/lib/i386/libzip.so
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/lib/libreadline.so.6.1
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0
/usr/lib/R/library/survival/libs/survival.so
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/usr/lib/jvm/java-6-openjdk/jre/lib/i386/client/libjvm.so
/usr/lib/jvm/java-6-openjdk/jre/lib/i386/client/libjvm.so
0
/home/kat/R/i486-pc-linux-gnu-library/2.10/mvtnorm/libs/mvtnorm.so
/home/kat/R/i486-pc-linux-gnu-library/2.10/mvtnorm/libs/mvtnorm.so
/home/kat/R/i486-pc-linux-gnu-library/2.10/mvtnorm/libs/mvtnorm.so
0
/usr/lib/libgio-2.0.so.0.2400.1
/usr/lib/libgio-2.0.so.0.2400.1
/usr/lib/libgio-2.0.so.0.2400.1
/usr/lib/libgio-2.0.so.0.2400.1
0
/usr/lib/libblas.so.3gf.0
/usr/lib/libblas.so.3gf.0
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/usr/lib/libgtk-x11-2.0.so.0.2000.1
/usr/lib/libgtk-x11-2.0.so.0.2000.1
0
/lib/libncurses.so.5.7
/lib/libncurses.so.5.7
/lib/libncurses.so.5.7
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/usr/lib/R/library/foreign/libs/foreign.so
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/usr/lib/R/lib/libR.so
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0
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0
/usr/lib/R/library/stats/libs/stats.so
/usr/lib/R/library/stats/libs/stats.so
/usr/lib/R/library/stats/libs/stats.so
0
[heap]
0
0
0
0
0
0
/usr/lib/jvm/java-6-openjdk/jre/lib/i386/client/classes.jsa
0
/usr/lib/jvm/java-6-openjdk/jre/lib/i386/client/classes.jsa
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/usr/lib/jvm/java-6-openjdk/jre/lib/i386/client/classes.jsa
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0
[threadstack:0004d494]
/SYSV00000000 (deleted)
0
0
0
/home/kat/R/i486-pc-linux-gnu-library/2.10/Deducer/java/deducer.jar
0
0
/SYSV00000000 (deleted)
/home/kat/R/i486-pc-linux-gnu-library/2.10/JGR/java/JGR.jar
/home/kat/R/i486-pc-linux-gnu-library/2.10/JavaGD/java/javaGD.jar
/home/kat/R/i486-pc-linux-gnu-library/2.10/iplots/java/iplots.jar
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/usr/lib/locale/de_CH.utf8/LC_MESSAGES/SYS_LC_MESSAGES
/usr/lib/locale/de_CH.utf8/LC_PAPER
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/usr/lib/locale/de_CH.utf8/LC_ADDRESS
/usr/lib/locale/de_CH.utf8/LC_TELEPHONE
/usr/lib/locale/de_CH.utf8/LC_MEASUREMENT
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0
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0
0
/usr/lib/jvm/java-6-openjdk/jre/lib/resources.jar
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/usr/local/lib/R/site-library/iplots/java/iplots.jar
/usr/local/lib/R/site-library/rJava/jri/JRI.jar
/usr/share/java/gnome-java-bridge.jar
/usr/lib/jvm/java-6-openjdk/jre/lib/ext/pulse-java.jar
0
0
0
0
0
0
0
0
/usr/lib/gconv/gconv-modules.cache
/usr/lib/locale/de_CH.utf8/LC_CTYPE
0
0
0
0
0
0
/usr/lib/jvm/java-6-openjdk/jre/lib/rt.jar
0
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0
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/tmp/hsperfdata_kat/9283
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0
[stack]

VM Arguments:
jvm_args: -Xmx512m -Djgr.load.pkgs=yes -Djgr.loader.ver=1.61 -Djava.library.path=.:/usr/lib/R/lib:/usr/lib/jvm/java-6-openjdk/jre/lib/i386/client:/usr/lib/jvm/java-6-openjdk/jre/lib/i386:/usr/lib/jvm/java-6-openjdk/jre/../lib/i386::/usr/java/packages/lib/i386:/usr/lib/jni:/lib:/usr/lib:@JAVA_LD@:/usr/local/lib/R/site-library/rJava/jri:/usr/lib/R/lib:/usr/lib/R/bin:/usr/lib/R/lib:/usr/lib/jvm/java-6-openjdk/jre/lib/i386/client:/usr/lib/jvm/java-6-openjdk/jre/lib/i386:/usr/lib/jvm/java-6-openjdk/jre/../lib/i386::/usr/java/packages/lib/i386:/usr/lib/jni:/lib:/usr/lib:@JAVA_LD@:/usr/local/lib/R/site-library/rJava/jri -Drjava.path=/usr/local/lib/R/site-library/rJava -Drjava.class.path=/usr/local/lib/R/site-library/rJava/jri/JRI.jar:/usr/local/lib/R/site-library/iplots/java/iplots.jar:/home/kat/R/i486-pc-linux-gnu-library/2.12/JGR/java/JGR.jar -Dmain.class=org.rosuda.JGR.JGR
java_command: RJavaClassLoader
Launcher Type: SUN_STANDARD

Environment Variables:
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
USERNAME=kat
LD_LIBRARY_PATH=/usr/lib/jvm/java-6-openjdk/jre/lib/i386/client:/usr/lib/jvm/java-6-openjdk/jre/lib/i386:/usr/lib/jvm/java-6-openjdk/jre/../lib/i386:/usr/lib/R/lib:/usr/lib/jvm/java-6-openjdk/jre/lib/i386/client:/usr/lib/jvm/java-6-openjdk/jre/lib/i386:/usr/lib/jvm/java-6-openjdk/jre/../lib/i386::/usr/java/packages/lib/i386:/usr/lib/jni:/lib:/usr/lib:@JAVA_LD@:/usr/local/lib/R/site-library/rJava/jri:/usr/lib/R/lib:/usr/lib/R/bin:/usr/lib/R/lib:/usr/lib/jvm/java-6-openjdk/jre/lib/i386/client:/usr/lib/jvm/java-6-openjdk/jre/lib/i386:/usr/lib/jvm/java-6-openjdk/jre/../lib/i386::/usr/java/packages/lib/i386:/usr/lib/jni:/lib:/usr/lib:@JAVA_LD@:/usr/local/lib/R/site-library/rJava/jri:@JAVA_LD@
SHELL=/bin/bash
DISPLAY=:0.0

Signal Handlers:
SIGSEGV: [libjvm.so+0x3af380], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGBUS: [libjvm.so+0x3af380], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGFPE: [libjvm.so+0x2d93c0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGPIPE: SIG_IGN, sa_mask[0]=0x00001000, sa_flags=0x10000000
SIGXFSZ: [libjvm.so+0x2d93c0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGILL: [libjvm.so+0x2d93c0], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGUSR1: SIG_DFL, sa_mask[0]=0x00000000, sa_flags=0x00000000
SIGUSR2: [libjvm.so+0x2d8ab0], sa_mask[0]=0x00000004, sa_flags=0x10000004
SIGHUP: [libjvm.so+0x2db260], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGINT: SIG_IGN, sa_mask[0]=0x00000000, sa_flags=0x00000000
SIGTERM: [libjvm.so+0x2db260], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004
SIGQUIT: [libjvm.so+0x2db260], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004

--------------- S Y S T E M ---------------

OS:LinuxMint 9 (isadora)
uname:Linux 2.6.32-21-generic #32-Ubuntu SMP Fri Apr 16 08:10:02 UTC 2010 i686
libc:glibc 2.11.1 NPTL 2.11.1
rlimit: STACK 8192k, CORE 0k, NPROC infinity, NOFILE 1024, AS infinity
load average:1.49 0.93 0.70

CPU:total 1 (1 cores per cpu, 1 threads per core) family 6 model 13 stepping 8, cmov, cx8, fxsr, mmx, sse, sse2

Memory: 4k page, physical 1017340k(42904k free), swap 1050616k(1050616k free)

vm_info: OpenJDK Client VM (16.0-b13) for linux-x86 JRE (1.6.0_18-b18), built on Oct 25 2010 18:26:10 by "buildd" with gcc 4.4.3

time: Tue Nov 16 09:31:10 2010
elapsed time: 36 seconds

# If you would like to submit a bug report, please include
# instructions how to reproduce the bug and visit:
# https://bugs.launchpad.net/ubuntu/+source/openjdk-6/
# The crash happened outside the Java Virtual Machine in native code.
# See problematic frame for where to report the bug.
#
Aborted

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Ubuntuopenjdk-6 package

Crash of R with JGR when making graphs

Bug Description

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openjdk-6 package