Chemtool not starts (breezy)

Bug #649 reported by Daniel Martin Yerga
8
Affects Status Importance Assigned to Milestone
chemtool (Ubuntu)
Fix Released
Medium
MOTU

Bug Description

The app chemtool not starts in Breezy, a backtrace of the app:

Program received signal SIGSEGV, Segmentation fault.
0xb7ca2c6a in strcmp () from /lib/tls/i686/cmov/libc.so.6
(gdb) bt
#0 0xb7ca2c6a in strcmp () from /lib/tls/i686/cmov/libc.so.6
#1 0xb7f31dd5 in gtk_label_set_text () from /usr/lib/libgtk-1.2.so.0
#2 ...

The app chemtool not starts in Breezy, a backtrace of the app:

Program received signal SIGSEGV, Segmentation fault.
0xb7ca2c6a in strcmp () from /lib/tls/i686/cmov/libc.so.6
(gdb) bt
#0 0xb7ca2c6a in strcmp () from /lib/tls/i686/cmov/libc.so.6
#1 0xb7f31dd5 in gtk_label_set_text () from /usr/lib/libgtk-1.2.so.0
#2 0xb7ecaf5a in gtk_accel_label_new ()
   from /usr/lib/libgtk-1.2.so.0
#3 0xb7f45565 in gtk_menu_item_new_with_label ()
   from /usr/lib/libgtk-1.2.so.0
#4 0x0805dfd3 in ?? ()
#5 0x31003531 in ?? ()
#6 0x08182498 in ?? ()
#7 0x08089009 in _IO_stdin_used ()
#8 0x00000000 in ?? ()
#9 0x00000000 in ?? ()
#10 0x00000001 in ?? ()
#11 0xb8000b94 in ?? ()
#12 0x00000000 in ?? ()
#13 0x00000000 in ?? ()
#14 0x00000000 in ?? ()
#15 0x00000000 in ?? ()
#16 0x00000000 in ?? ()
#17 0x00000005 in ?? ()
#18 0x00000005 in ?? ()
#19 0x00000005 in ?? ()
#20 0x00000005 in ?? ()
#21 0x00000005 in ?? ()
#22 0x00000005 in ?? ()
#23 0x00000005 in ?? ()
#24 0x00000078 in ?? ()
#25 0x0000005f in ?? ()
#26 0x00000046 in ?? ()
#27 0x0000002d in ?? ()
#28 0x00000000 in ?? ()
#29 0x00000b08 in ?? ()
#30 0x08108be8 in ?? ()
#31 0x0816a9c8 in ?? ()
#32 0x0816d438 in ?? ()
#33 0x08171c10 in ?? ()
#34 0x0000002f in ?? ()
#35 0x00000005 in ?? ()
#36 0x08106f20 in ?? ()
#37 0x0810f2a8 in ?? ()
#38 0x08110f98 in ?? ()
#39 0x08148a40 in ?? ()
#40 0x08140598 in ?? ()
#41 0x08174c68 in ?? ()
#42 0x08176dd0 in ?? ()
#43 0x08175034 in ?? ()
#44 0x08176fc8 in ?? ()
#45 0x08176e24 in ?? ()
#46 0x081795f8 in ?? ()
#47 0x08179748 in ?? ()
#48 0x08179844 in ?? ()
#49 0x0810bc80 in ?? ()
#50 0x0817a688 in ?? ()
#51 0x08174b30 in ?? ()
#52 0x081647d8 in ?? ()
#53 0x08164ba0 in ?? ()
#54 0x08164d08 in ?? ()
#55 0x08164790 in ?? ()
#56 0x08164da8 in ?? ()
#57 0x00000003 in ?? ()
#58 0x0810fad0 in ?? ()
#59 0x08148970 in ?? ()
#60 0x080a0594 in _IO_stdin_used ()
#61 0x08141340 in ?? ()
#62 0x08141118 in ?? ()
#63 0x08141068 in ?? ()
#64 0x08140f58 in ?? ()
#65 0x080a63e0 in ?? ()
#66 0xbffff7cb in ?? ()
#67 0x080ae184 in ?? ()
#68 0x080ae184 in ?? ()
#69 0x00000032 in ?? ()
#70 0x080ac9b0 in ?? ()
#71 0x080ac9b0 in ?? ()
#72 0x00000032 in ?? ()
#73 0x080ab1dc in ?? ()
#74 0x080ab1dc in ?? ()
#75 0x00000032 in ?? ()
#76 0x080a9a08 in ?? ()
#77 0x080a9a08 in ?? ()
#78 0x00000032 in ?? ()
#79 0x080a8234 in ?? ()
#80 0x080a68c4 in ?? ()
#81 0x080a8234 in ?? ()
#82 0x00000032 in ?? ()
#83 0x080a50ac in ?? ()
#84 0x000000bc in ?? ()
#85 0x00000051 in ?? ()
#86 0x00000005 in ?? ()
#87 0x00000005 in ?? ()
#88 0x00000005 in ?? ()
#89 0x00000005 in ?? ()
#90 0x0817a8a0 in ?? ()
#91 0x0817aa38 in ?? ()
#92 0x0817ab80 in ?? ()
#93 0x0817acf0 in ?? ()
#94 0x0817ae38 in ?? ()
#95 0x0817afd0 in ?? ()
#96 0x0817b118 in ?? ()
#97 0x0817b240 in ?? ()
#98 0x0817d400 in ?? ()
#99 0x0817d528 in ?? ()
#100 0x0817d6d8 in ?? ()
#101 0x0817d808 in ?? ()
#102 0x0817d8f8 in ?? ()
#103 0x0817da08 in ?? ()
#104 0x0817db50 in ?? ()
#105 0x0817dd70 in ?? ()
#106 0x0817de80 in ?? ()
#107 0x0817df98 in ?? ()
#108 0x0817ec98 in ?? ()
#109 0x081806a0 in ?? ()
#110 0x081807e8 in ?? ()
#111 0x08180900 in ?? ()
#112 0x08180a68 in ?? ()
#113 0x08180fb0 in ?? ()
#114 0x0817cff0 in ?? ()
#115 0x08174a20 in ?? ()
#116 0x081725b8 in ?? ()
#117 0x0816e190 in ?? ()
#118 0x0816b3c0 in ?? ()
#119 0x08166898 in ?? ()
#120 0x00000014 in ?? ()
#121 0x00000005 in ?? ()
#122 0x00000005 in ?? ()
#123 0x00000005 in ?? ()
#124 0x00000005 in ?? ()
#125 0x00000005 in ?? ()
#126 0x08148a88 in ?? ()
#127 0x0815dff0 in ?? ()
#128 0x0815fa80 in ?? ()
#129 0x0815fbf0 in ?? ()
#130 0x0815fda8 in ?? ()
#131 0x081609e8 in ?? ()
#132 0x08161658 in ?? ()
#133 0x08162a90 in ?? ()
#134 0x0817a538 in ?? ()
#135 0x08180a18 in ?? ()
#136 0xb7c48d94 in ?? () from /lib/tls/i686/cmov/libc.so.6
#137 0x08174b68 in ?? ()
#138 0x08168ea8 in ?? ()
#139 0x0816b4d0 in ?? ()
#140 0x0816e298 in ?? ()
#141 0x08172680 in ?? ()
#142 0x08168e50 in ?? ()
#143 0x0816b478 in ?? ()
#144 0x0816e240 in ?? ()
#145 0x08172628 in ?? ()
#146 0x08139704 in ?? ()
#147 0x0812d910 in ?? ()
#148 0x080df110 in ?? ()
#149 0x080df0d8 in ?? ()
#150 0x0000f764 in ?? ()
#151 0x037f0c7f in ?? ()
#152 0x00000008 in ?? ()
#153 0xb7c36080 in ?? ()
#154 0x00000001 in ?? ()
#155 0x31d75250 in ?? ()
#156 0x36362e30 in ?? ()
#157 0x20003038 in ?? ()
#158 0x79782028 in ?? ()
#159 0x0029207a in ?? ()
#160 0x29206c6f in ?? ()
#161 0x7a797800 in ?? ()
#162 0x00002920 in ?? ()
#163 0x63002920 in ?? ()
#164 0x29206c6d in ?? ()
#165 0xbffff700 in ?? ()
#166 0xb7ff2689 in _dl_rtld_di_serinfo () from /lib/ld-linux.so.2
#167 0xb7c52408 in __libc_start_main ()
   from /lib/tls/i686/cmov/libc.so.6
#168 0x0804e631 in ?? ()

Revision history for this message
Jeroen (jeroenubuntu) wrote :

doesn't work here either (Breezy)

jeroen@breezy:~$ chemtool
sh: babel: command not found
Consider installing Babel/OpenBabel for file format conversions...
Segmentation fault
jeroen@breezy:~$ sudo apt-get install openbabel
Password:
Reading package lists... Done
Building dependency tree... Done
The following extra packages will be installed:
  libopenbabel0c2
The following NEW packages will be installed:
  libopenbabel0c2 openbabel
0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded.
Need to get 703kB of archives.
After unpacking 2114kB of additional disk space will be used.
Do you want to continue [Y/n]?
Get:1 http://nl.archive.ubuntu.com breezy/universe libopenbabel0c2 1.100.2-2ubuntu1 [594kB]
Get:2 http://nl.archive.ubuntu.com breezy/universe openbabel 1.100.2-2ubuntu1 [109kB]
Fetched 703kB in 10s (64.8kB/s)

Preconfiguring packages ...
Selecting previously deselected package libopenbabel0c2.
(Reading database ... 82144 files and directories currently installed.)
Unpacking libopenbabel0c2 (from .../libopenbabel0c2_1.100.2-2ubuntu1_i386.deb) ...
Selecting previously deselected package openbabel.
Unpacking openbabel (from .../openbabel_1.100.2-2ubuntu1_i386.deb) ...
Setting up libopenbabel0c2 (1.100.2-2ubuntu1) ...

Setting up openbabel (1.100.2-2ubuntu1) ...
jeroen@breezy:~$ chemtool
Segmentation fault

Revision history for this message
Jeroen (jeroenubuntu) wrote :

Oh by the way, it should have installed openbabel as a dependency, because chemtool won't do a thing without that!

Changed in chemtool:
assignee: nobody → motu
StefanPotyra (sistpoty)
Changed in chemtool:
status: New → PendingUpload
Changed in chemtool:
status: PendingUpload → Fixed
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