Sync theseus 1.4.3-2 (universe) from Debian unstable (main)

[Morten Kjeldgaard]

Please sync theseus 1.4.3-2 (universe) from Debian unstable (main)

Explanation of the Ubuntu delta and why it can be dropped:

Maintenance of this package has moved to Debian. No Ubuntu-specific
mods required, can be sync'ed from now on.

Changelog entries since current lucid version 1.3.9-1ubuntu1:

theseus (1.4.3-2) unstable; urgency=low

  * debian/patches/10_kbsd.patch: Correctly applied patch from
    Cyril (sorry for mixing this up)
    Closes: #542879

 -- Andreas Tille <email address hidden> Thu, 03 Sep 2009 08:49:22 +0200

theseus (1.4.3-1) unstable; urgency=low

  [Andreas Tille]
  * New upstream version
    Closes: #534630
  * debian/control
    - Added myself to uploaders
    - debhelper 7
    - Build-Depends: libtool
    - Standards-Version: 3.8.3 (no changes needed)
  * Switched to quilt (affects debian/patches/*, debian/control,
    debian/rules)
  * Added Suggests: clustlaw, mafft, t-coffee, kalign, dialign
    because these are called in theseus_align
  * Use debian/{docs,manpages, examples} instead of arguments of
    the debhelper installers to enable short rules file
  * Re-enabled patch for theseus_align and do not tweak upstream
    tarball just to s?usr/local/bin?usr/bin?
  * debian/patches/200-make.inc.patch: Use ar directly to to avoid
    problems with libtool, drop -arch command line options to gcc
    which let compilation fail
  * debian/README.Debian: Removed paragraph about theseus_align
    because this is now shipped in upstream tarball
  * debian/patches/10_kbsd.patch: fix the FTBFS problem reported by
    Cyril Brulebois <email address hidden> (thanks to Cyril for the patch)
    Closes: #542879

  [Morten Kjeldgaard]
  * Fix FTBFS on certain platforms that lack the Atlas libraries
    by using lapack-dev in Build-Depends. This will pull in Atlas
    on the relevant platforms, otherwise not.

 -- Andreas Tille <email address hidden> Mon, 31 Aug 2009 14:50:19 +0200

[Sebastien Bacher (seb128)]

[Updating] theseus (1.3.9-1ubuntu1 [Ubuntu] < 1.4.3-2 [Debian])
 * Trying to add theseus...
  - <theseus_1.4.3-2.diff.gz: downloading from http://ftp.debian.org/debian/>
  - <theseus_1.4.3.orig.tar.gz: downloading from http://ftp.debian.org/debian/>
  - <theseus_1.4.3-2.dsc: downloading from http://ftp.debian.org/debian/>
I: theseus [universe] -> theseus_1.3.9-1ubuntu1 [universe].