r-bioc-rhtslib: Please RM armhf binaries

[Graham Inggs]

The latest sync from Debian no longer builds for 32-bit architectures, to avoid the time_t transition.

r-bioc-rhtslib (2.4.1+dfsg-3) unstable; urgency=medium

  * Build-Depends: architecture-is-64-bit
    and revert to Architecture: any since this is the more elegant way
    to exclude 32bit (thanks for the hint to Paul Gevers)

 -- Andreas Tille <email address hidden> Mon, 04 Mar 2024 08:22:57 +0100

r-bioc-rhtslib (2.4.1+dfsg-2) unstable; urgency=medium

  * Restrict architectures to 64bit to avoid time_t transition
    Closes: #1063275

 -- Andreas Tille <email address hidden> Wed, 07 Feb 2024 07:58:13 +0100

Please remove the armhf binaries built by r-bioc-rhtslib and its reverse-dependencies from noble.

[Graham Inggs (ginggs)]

$ reverse-depends -x -d 3 r-bioc-rhtslib
Reverse-Depends
===============
* r-bioc-rsamtools [amd64 arm64 armhf ppc64el s390x]
  * r-bioc-purecn
  * r-bioc-ggbio
  * r-bioc-ensembldb
    * r-bioc-ggbio
    * r-bioc-gviz
      * r-bioc-cummerbund
        * med-bio
          * science-biology
          * med-all
    * r-bioc-scrnaseq
    * r-bioc-tximeta
      * r-bioc-isoformswitchanalyzer [amd64 arm64 armhf ppc64el s390x]
    * r-bioc-biovizbase [amd64 arm64 armhf ppc64el s390x]
      * r-bioc-gviz
        * r-bioc-cummerbund
          * med-bio
            * science-biology
            * med-all
      * r-bioc-ggbio
  * r-bioc-edaseq
  * r-bioc-biovizbase [amd64 arm64 armhf ppc64el s390x]
    * r-bioc-gviz
      * r-bioc-cummerbund
        * med-bio
          * science-biology
          * med-all
    * r-bioc-ggbio
  * r-bioc-variantannotation [amd64 arm64 armhf ppc64el s390x]
    * r-bioc-purecn
    * r-bioc-ggbio
    * r-bioc-genomicfiles
    * r-bioc-biovizbase [amd64 arm64 armhf ppc64el s390x]
      * r-bioc-gviz
        * r-bioc-cummerbund
          * med-bio
            * science-biology
            * med-all
      * r-bioc-ggbio
    * r-bioc-structuralvariantannotation
    * r-bioc-mutationalpatterns
      * med-bio
        * science-biology
        * med-all
    * r-bioc-titancna [amd64 arm64 armhf ppc64el s390x]
  * r-bioc-shortread [amd64 arm64 armhf ppc64el s390x]
    * r-bioc-dada2 [amd64]
    * r-bioc-edaseq
    * r-bioc-ioniser
  * r-bioc-degnorm [amd64 arm64 armhf ppc64el s390x]
  * r-bioc-gviz
    * r-bioc-cummerbund
      * med-bio
        * science-biology
        * med-all
  * r-cran-spp [amd64 arm64 armhf ppc64el s390x]
    * med-bio
      * science-biology
      * med-all
  * r-bioc-genomicalignments [amd64 arm64 armhf ppc64el s390x]
    * r-bioc-genomicfiles
    * r-bioc-gviz
      * r-bioc-cummerbund
        * med-bio
          * science-biology
          * med-all
    * r-bioc-ggbio
    * r-cran-alakazam [amd64 arm64 armhf ppc64el s390x]
      * med-bio
        * science-biology
        * med-all
      * r-cran-shazam
      * r-cran-tigger
    * r-bioc-grohmm [amd64 arm64 armhf ppc64el s390x]
    * r-bioc-rtracklayer [amd64 arm64 armhf ppc64el s390x]
      * med-bio
        * science-biology
        * med-all
      * r-cran-seurat [amd64 arm64 armhf ppc64el s390x]
        * med-bio-dev
        * med-bio
          * science-biology
          * med-all
      * r-bioc-cner [amd64 arm64 armhf ppc64el s390x]
        * med-bio
          * science-biology
          * med-all
        * r-bioc-tfbstools [amd64 arm64 armhf ppc64el s390x]
          * med-bio
            * science-biology
            * med-all
      * r-bioc-tfbstools [amd64 arm64 armhf ppc64el s390x]
        * med-bio
          * science-biology
          * med-all
      * r-bioc-variantannotation [amd64 arm64 armhf ppc64el s390x]
        * r-bioc-purecn
        * r-bioc-ggbio
        * r-bioc-genomicfiles
        * r-bioc-biovizbase [amd64 arm64 armhf ppc64el s390x]
          * r-bioc-gviz
            * r-bioc-cummerbund
              * med-bio
                * science-biology
                * med-all
          * r-bioc-ggbio
        * r-bioc-structuralvariant...

[Graham Inggs (ginggs)]

reverse-depends doesn't seem to be able to go further than a recursion depth of 3.
I'll try a different approach.

[Graham Inggs (ginggs)]

For reference, the Debian time_t bug is:
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1063275

and the removal bug is:
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1063376

[Steve Langasek (vorlon)]

Of course, reverse-depends also doesn't tell you if the reverse-dependency is arch: all.

Removing packages from noble:
 r-bioc-biovizbase 1.50.0-1 in noble armhf
Comment: armhf removals
1 package successfully removed.
Removing packages from noble:
 r-bioc-degnorm 1.12.0+ds-1 in noble armhf
Comment: armhf removals
1 package successfully removed.
Removing packages from noble:
 r-bioc-tfbstools 1.40.0+dfsg-1 in noble armhf
Comment: armhf removals
1 package successfully removed.
Removing packages from noble:
 r-bioc-cner 1.38.0+dfsg-2 in noble armhf
Comment: armhf removals
1 package successfully removed.
Removing packages from noble:
 r-bioc-grohmm 1.36.0-1 in noble armhf
Comment: armhf removals
1 package successfully removed.
Removing packages from noble:
 r-bioc-isoformswitchanalyzer 2.2.0+ds-1 in noble armhf
Comment: armhf removals
1 package successfully removed.
Removing packages from noble:
 r-bioc-titancna 1.40.0-1 in noble armhf
Comment: armhf removals
1 package successfully removed.
Removing packages from noble:
 r-bioc-variantannotation 1.48.1-1 in noble armhf
Comment: armhf removals
1 package successfully removed.
Removing packages from noble:
 r-bioc-rtracklayer 1.62.0-1 in noble armhf
Comment: armhf removals
1 package successfully removed.
Removing packages from noble:
 r-bioc-shortread 1.60.0-2 in noble armhf
Comment: armhf removals
1 package successfully removed.
Removing packages from noble:
 r-cran-alakazam 1.3.0-1 in noble armhf
Comment: armhf removals
1 package successfully removed.
Removing packages from noble:
 r-bioc-genomicalignments 1.38.2-1 in noble armhf
Comment: armhf removals
1 package successfully removed.

[Steve Langasek (vorlon)]

And the last bits.

Removing packages from noble:
 r-cran-spp 1.16.0-2 in noble armhf
Comment: armhf removals
1 package successfully removed.
Removing packages from noble:
 r-bioc-rsamtools 2.18.0+dfsg-1 in noble armhf
Comment: armhf removals
1 package successfully removed.
Removing packages from noble:
 r-bioc-rhtslib 2.4.1+dfsg-1 in noble armhf
Comment: armhf removals
1 package successfully removed.