Sync hmmer 3.2.1+dfsg-1 (universe) from Debian unstable (main)

[Dylan Aïssi]

Please sync hmmer 3.2.1+dfsg-1 (universe) from Debian unstable (main)

Explanation of the Ubuntu delta and why it can be dropped:
  * Sync on Debian unstable. Remaining changes:
    - Enable altivec on powerpc/ppc64el
    - Enable arch:any builds

You can drop the delta because ppc64el is not supported by the hmmer3 devs (see [1] p.19).

I have re-enabled builds for powerpc [2] and ppc64 [3] (both are supported by upstream [1]). It will be uploaded in Debian after the current freeze, but I think it is not useful to keep a delta here only for not official arches (powerpc and ppc64).

[1] http://eddylab.org/software/hmmer/Userguide.pdf
[2] https://salsa.debian.org/med-team/hmmer/commit/cc7071c346d9b756a97aef1f76bcf43260fca7a2
[3] https://salsa.debian.org/med-team/hmmer/commit/42f2718a6e99d097264d46a335dd8fe964016955

Changelog entries since current eoan version 3.1b2+dfsg-5ubuntu1:

hmmer (3.2.1+dfsg-1) unstable; urgency=medium

  [ Andreas Tille ]
  * Fix watch file
  * New upstream version
  * debhelper 11
  * Point Vcs fields to salsa.debian.org
  * Standards-Version: 4.2.0
  * Adapt doc-base control file to new location of doc
  * d/rules:
     - Respect DEB_BUILD_OPTIONS in override_dh_auto_test
     - Do not parse d/changelog
     - Fix permission of manpage

  [ Dylan Aïssi ]
  * Fix OMICtools ID and replace RRID by SciCrunch

 -- Andreas Tille <email address hidden> Fri, 24 Aug 2018 08:48:36 +0200

[Graham Inggs (ginggs)]

Version 3.2.1 now FTBFS on unsupported architectures during configure, so there is no point in trying to apply the Ubuntu delta.

e.g. (on arm64)

configure: ::::::::::--- no vector instruction set ---::::::::::
configure: HMMER3 requires SSE or VMX vector instructions.
configure: Supported platforms are x86 (Intel/AMD) and PowerPC.
configure: error: No supported vectorization found for your machine.

and (on ppc64el)

configure: ::::::::::--- no vector instruction set ---::::::::::
configure: HMMER3 Altivec/VMX only supports bigendian platforms: e.g.
ppc64 not ppc64le
configure: error: No supported vectorization found for your machine.

[Graham Inggs (ginggs)]

This bug was fixed in the package hmmer - 3.2.1+dfsg-1
Sponsored for Dylan Aïssi (daissi)

---------------
hmmer (3.2.1+dfsg-1) unstable; urgency=medium

  [ Andreas Tille ]
  * Fix watch file
  * New upstream version
  * debhelper 11
  * Point Vcs fields to salsa.debian.org
  * Standards-Version: 4.2.0
  * Adapt doc-base control file to new location of doc
  * d/rules:
     - Respect DEB_BUILD_OPTIONS in override_dh_auto_test
     - Do not parse d/changelog
     - Fix permission of manpage

  [ Dylan Aïssi ]
  * Fix OMICtools ID and replace RRID by SciCrunch

 -- Andreas Tille <email address hidden> Fri, 24 Aug 2018 08:48:36 +0200