Ubuntu
mysql-5.7 package

package mysql-server-5.7 5.7.24-0ubuntu0.18.04.1 failed to install/upgrade: installed mysql-server-5.7 package post-installation script subprocess returned error exit status 1

Bug #1803141 reported by leyb weg on 2018-11-13

This bug affects 1 person

Affects		Status	Importance	Assigned to	Milestone
	mysql-5.7 (Ubuntu)	Expired	Undecided	Unassigned

Bug Description

THIS WAS UPDATED TOGETHER:

Start-Date: 2018-11-13 08:19:50
Commandline: /usr/bin/unattended-upgrade
Remove: linux-modules-extra-4.15.0-29-generic:amd64 (4.15.0-29.31)
End-Date: 2018-11-13 08:19:51

Start-Date: 2018-11-13 08:20:21
Commandline: /usr/bin/unattended-upgrade
Upgrade: distro-info-data:amd64 (0.37ubuntu0.1, 0.37ubuntu0.2)
End-Date: 2018-11-13 08:20:22

Start-Date: 2018-11-13 08:20:25
Commandline: /usr/bin/unattended-upgrade
Upgrade: firefox:amd64 (62.0.3+build1-0ubuntu0.18.04.1, 63.0+build2-0ubuntu0.18.04.2)
End-Date: 2018-11-13 08:20:29

Start-Date: 2018-11-13 08:20:32
Commandline: /usr/bin/unattended-upgrade
Upgrade: firefox-locale-en:amd64 (62.0.3+build1-0ubuntu0.18.04.1, 63.0+build2-0ubuntu0.18.04.2)
End-Date: 2018-11-13 08:20:33

Start-Date: 2018-11-13 08:20:35
Commandline: /usr/bin/unattended-upgrade
Upgrade: firefox-locale-he:amd64 (62.0.3+build1-0ubuntu0.18.04.1, 63.0+build2-0ubuntu0.18.04.2)
End-Date: 2018-11-13 08:20:36

Start-Date: 2018-11-13 08:20:38
Commandline: /usr/bin/unattended-upgrade
Upgrade: gettext:amd64 (0.19.8.1-6, 0.19.8.1-6ubuntu0.1)
End-Date: 2018-11-13 08:20:40

Start-Date: 2018-11-13 08:20:42
Commandline: /usr/bin/unattended-upgrade
Upgrade: gettext-base:amd64 (0.19.8.1-6, 0.19.8.1-6ubuntu0.1)
End-Date: 2018-11-13 08:20:44

Start-Date: 2018-11-13 08:20:46
Commandline: /usr/bin/unattended-upgrade
Upgrade: gir1.2-nm-1.0:amd64 (1.10.6-2ubuntu1, 1.10.6-2ubuntu1.1)
End-Date: 2018-11-13 08:20:46

Start-Date: 2018-11-13 08:20:49
Commandline: /usr/bin/unattended-upgrade
Upgrade: git:amd64 (1:2.17.1-1ubuntu0.1, 1:2.17.1-1ubuntu0.3)
End-Date: 2018-11-13 08:20:50

Start-Date: 2018-11-13 08:20:54
Commandline: /usr/bin/unattended-upgrade
Upgrade: git-man:amd64 (1:2.17.1-1ubuntu0.1, 1:2.17.1-1ubuntu0.3)
End-Date: 2018-11-13 08:20:56

Start-Date: 2018-11-13 08:20:58
Commandline: /usr/bin/unattended-upgrade
Upgrade: libcurl3-gnutls:amd64 (7.58.0-2ubuntu3.3, 7.58.0-2ubuntu3.5)
End-Date: 2018-11-13 08:20:59

Start-Date: 2018-11-13 08:21:02
Commandline: /usr/bin/unattended-upgrade
Upgrade: libkpathsea6:amd64 (2017.20170613.44572-8build1, 2017.20170613.44572-8ubuntu0.1)
End-Date: 2018-11-13 08:21:03

Start-Date: 2018-11-13 08:21:06
Commandline: /usr/bin/unattended-upgrade
Upgrade: libmad0:amd64 (0.15.1b-8ubuntu1, 0.15.1b-9ubuntu18.04.1)
End-Date: 2018-11-13 08:21:07

Start-Date: 2018-11-13 08:21:09
Commandline: /usr/bin/unattended-upgrade
Upgrade: libnm0:amd64 (1.10.6-2ubuntu1, 1.10.6-2ubuntu1.1)
End-Date: 2018-11-13 08:21:10

Start-Date: 2018-11-13 08:21:13
Commandline: /usr/bin/unattended-upgrade
Upgrade: libnss-myhostname:amd64 (237-3ubuntu10.3, 237-3ubuntu10.6)
End-Date: 2018-11-13 08:21:14

Start-Date: 2018-11-13 08:21:16
Commandline: /usr/bin/unattended-upgrade
Upgrade: libsnmp-base:amd64 (5.7.3+dfsg-1.8ubuntu3, 5.7.3+dfsg-1.8ubuntu3.1)
End-Date: 2018-11-13 08:21:17

Start-Date: 2018-11-13 08:21:19
Commandline: /usr/bin/unattended-upgrade
Upgrade: libsnmp30:amd64 (5.7.3+dfsg-1.8ubuntu3, 5.7.3+dfsg-1.8ubuntu3.1)
End-Date: 2018-11-13 08:21:20

Start-Date: 2018-11-13 08:21:23
Commandline: /usr/bin/unattended-upgrade
Upgrade: libssh-4:amd64 (0.8.0~20170825.94fa1e38-1build1, 0.8.0~20170825.94fa1e38-1ubuntu0.1)
End-Date: 2018-11-13 08:21:23

Start-Date: 2018-11-13 08:21:26
Commandline: /usr/bin/unattended-upgrade
Upgrade: libssh-gcrypt-4:amd64 (0.8.0~20170825.94fa1e38-1build1, 0.8.0~20170825.94fa1e38-1ubuntu0.1)
End-Date: 2018-11-13 08:21:26

Start-Date: 2018-11-13 08:21:29
Commandline: /usr/bin/unattended-upgrade
Upgrade: mysql-client:amd64 (5.7.23-0ubuntu0.18.04.1, 5.7.24-0ubuntu0.18.04.1)
End-Date: 2018-11-13 08:21:29

Start-Date: 2018-11-13 08:21:32
Commandline: /usr/bin/unattended-upgrade
Upgrade: mysql-client-5.7:amd64 (5.7.23-0ubuntu0.18.04.1, 5.7.24-0ubuntu0.18.04.1)
End-Date: 2018-11-13 08:21:33

Start-Date: 2018-11-13 08:21:36
Commandline: /usr/bin/unattended-upgrade
Upgrade: mysql-client-core-5.7:amd64 (5.7.23-0ubuntu0.18.04.1, 5.7.24-0ubuntu0.18.04.1)
End-Date: 2018-11-13 08:21:37

Start-Date: 2018-11-13 08:21:40
Commandline: /usr/bin/unattended-upgrade
Upgrade: mysql-server:amd64 (5.7.23-0ubuntu0.18.04.1, 5.7.24-0ubuntu0.18.04.1)
End-Date: 2018-11-13 08:21:40

Start-Date: 2018-11-13 08:21:43
Commandline: /usr/bin/unattended-upgrade
Upgrade: network-manager:amd64 (1.10.6-2ubuntu1, 1.10.6-2ubuntu1.1)
End-Date: 2018-11-13 08:21:47

Start-Date: 2018-11-13 08:21:49
Commandline: /usr/bin/unattended-upgrade
Upgrade: openjdk-8-jre-headless:amd64 (8u181-b13-0ubuntu0.18.04.1, 8u181-b13-1ubuntu0.18.04.1)
End-Date: 2018-11-13 08:21:52

Start-Date: 2018-11-13 08:21:55
Commandline: /usr/bin/unattended-upgrade
Upgrade: openssh-client:amd64 (1:7.6p1-4, 1:7.6p1-4ubuntu0.1)
End-Date: 2018-11-13 08:21:56

Start-Date: 2018-11-13 08:21:59
Commandline: /usr/bin/unattended-upgrade
Upgrade: ppp:amd64 (2.4.7-2+2ubuntu1, 2.4.7-2+2ubuntu1.1)
End-Date: 2018-11-13 08:22:02

Start-Date: 2018-11-13 08:22:04
Commandline: /usr/bin/unattended-upgrade
Upgrade: python3-requests:amd64 (2.18.4-2, 2.18.4-2ubuntu0.1)
End-Date: 2018-11-13 08:22:05

Start-Date: 2018-11-13 08:22:07
Commandline: /usr/bin/unattended-upgrade
Upgrade: ruby2.5:amd64 (2.5.1-1ubuntu1, 2.5.1-1ubuntu1.1)
End-Date: 2018-11-13 08:22:09

Start-Date: 2018-11-13 08:22:11
Commandline: /usr/bin/unattended-upgrade
Upgrade: ruby2.5-doc:amd64 (2.5.1-1ubuntu1, 2.5.1-1ubuntu1.1)
End-Date: 2018-11-13 08:22:13

Start-Date: 2018-11-13 08:22:16
Commandline: /usr/bin/unattended-upgrade
Upgrade: systemd-sysv:amd64 (237-3ubuntu10.3, 237-3ubuntu10.6)
End-Date: 2018-11-13 08:22:18

Start-Date: 2018-11-13 08:22:20
Commandline: /usr/bin/unattended-upgrade
Upgrade: thunderbird-locale-en-us:amd64 (1:52.9.1+build3-0ubuntu0.18.04.1, 1:60.2.1+build1-0ubuntu0.18.04.2)
End-Date: 2018-11-13 08:22:20

Start-Date: 2018-11-13 08:22:23
Commandline: /usr/bin/unattended-upgrade
Upgrade: tzdata:amd64 (2018e-0ubuntu0.18.04, 2018g-0ubuntu0.18.04)
End-Date: 2018-11-13 08:22:24

Start-Date: 2018-11-13 08:22:26
Commandline: /usr/bin/unattended-upgrade
Upgrade: xserver-common:amd64 (2:1.19.6-1ubuntu4, 2:1.19.6-1ubuntu4.2)
End-Date: 2018-11-13 08:22:27

Start-Date: 2018-11-13 08:22:30
Commandline: /usr/bin/unattended-upgrade
Upgrade: libmysqlclient-dev:amd64 (5.7.23-0ubuntu0.18.04.1, 5.7.24-0ubuntu0.18.04.1), libmysqlclient20:amd64 (5.7.23-0ubuntu0.18.04.1, 5.7.24-0ubuntu0.18.04.1)
End-Date: 2018-11-13 08:22:32

Start-Date: 2018-11-13 08:22:34
Commandline: /usr/bin/unattended-upgrade
Upgrade: ruby2.5-dev:amd64 (2.5.1-1ubuntu1, 2.5.1-1ubuntu1.1), libruby2.5:amd64 (2.5.1-1ubuntu1, 2.5.1-1ubuntu1.1)
End-Date: 2018-11-13 08:22:35

Start-Date: 2018-11-13 08:22:38
Commandline: /usr/bin/unattended-upgrade
Upgrade: udev:amd64 (237-3ubuntu10.3, 237-3ubuntu10.6), libudev1:amd64 (237-3ubuntu10.3, 237-3ubuntu10.6)
End-Date: 2018-11-13 08:22:53

Start-Date: 2018-11-13 08:22:56
Commandline: /usr/bin/unattended-upgrade
Upgrade: libxkbcommon-x11-0:amd64 (0.8.0-1, 0.8.0-1ubuntu0.1), libxkbcommon0:amd64 (0.8.0-1, 0.8.0-1ubuntu0.1)
End-Date: 2018-11-13 08:22:56

Start-Date: 2018-11-13 08:22:59
Commandline: /usr/bin/unattended-upgrade
Upgrade: network-manager-config-connectivity-ubuntu:amd64 (1.10.6-2ubuntu1, 1.10.6-2ubuntu1.1)
End-Date: 2018-11-13 08:22:59

Start-Date: 2018-11-13 08:23:02
Commandline: /usr/bin/unattended-upgrade
Upgrade: xserver-xephyr:amd64 (2:1.19.6-1ubuntu4, 2:1.19.6-1ubuntu4.2)
End-Date: 2018-11-13 08:23:03

Start-Date: 2018-11-13 08:23:06
Commandline: /usr/bin/unattended-upgrade
Upgrade: xserver-xorg-core:amd64 (2:1.19.6-1ubuntu4, 2:1.19.6-1ubuntu4.2)
End-Date: 2018-11-13 08:23:07

Start-Date: 2018-11-13 08:23:10
Commandline: /usr/bin/unattended-upgrade
Upgrade: xserver-xorg-legacy:amd64 (2:1.19.6-1ubuntu4, 2:1.19.6-1ubuntu4.2)
End-Date: 2018-11-13 08:23:11

Start-Date: 2018-11-13 08:23:14
Commandline: /usr/bin/unattended-upgrade
Upgrade: xwayland:amd64 (2:1.19.6-1ubuntu4, 2:1.19.6-1ubuntu4.2)
End-Date: 2018-11-13 08:23:14

Start-Date: 2018-11-13 08:23:17
Commandline: /usr/bin/unattended-upgrade
Upgrade: libcurl4:amd64 (7.58.0-2ubuntu3.3, 7.58.0-2ubuntu3.5), libcurl4-openssl-dev:amd64 (7.58.0-2ubuntu3.3, 7.58.0-2ubuntu3.5), curl:amd64 (7.58.0-2ubuntu3.3, 7.58.0-2ubuntu3.5)
End-Date: 2018-11-13 08:23:18

Start-Date: 2018-11-13 08:23:21
Commandline: /usr/bin/unattended-upgrade
Upgrade: mysql-server-5.7:amd64 (5.7.23-0ubuntu0.18.04.1, 5.7.24-0ubuntu0.18.04.1), mysql-server-core-5.7:amd64 (5.7.23-0ubuntu0.18.04.1, 5.7.24-0ubuntu0.18.04.1)

Start-Date: 2018-11-13 16:13:42
Commandline: apt install linuxbrew-wrapper
Requested-By: opinya (1000)
Install: linuxbrew-wrapper:amd64 (20170516-2), python-pkg-resources:amd64 (39.0.1-2, automatic), python-setuptools:amd64 (39.0.1-2, automatic)
Error: Sub-process /usr/bin/dpkg returned an error code (1)
End-Date: 2018-11-13 16:15:26

ProblemType: Package
DistroRelease: Ubuntu 18.04
Package: mysql-server-5.7 5.7.24-0ubuntu0.18.04.1
ProcVersionSignature: Ubuntu 4.15.0-36.39-generic 4.15.18
Uname: Linux 4.15.0-36-generic x86_64
ApportVersion: 2.20.9-0ubuntu7.4
AptOrdering:
python-pkg-resources:amd64: Install
python-setuptools:amd64: Install
linuxbrew-wrapper:amd64: Install
NULL: ConfigurePending
Architecture: amd64
Date: Tue Nov 13 16:15:26 2018
ErrorMessage: installed mysql-server-5.7 package post-installation script subprocess returned error exit status 1
InstallationDate: Installed on 2018-09-03 (71 days ago)
InstallationMedia: Ubuntu 18.04.1 LTS "Bionic Beaver" - Release amd64 (20180725)
Logs.var.log.daemon.log:

MySQLConf.etc.mysql.conf.d.mysql.cnf: [mysql]
MySQLConf.etc.mysql.conf.d.mysqldump.cnf:
[mysqldump]
quick
quote-names
max_allowed_packet = 16M
MySQLConf.etc.mysql.mysql.conf.d.mysqld_safe_syslog.cnf:
[mysqld_safe]
syslog
MySQLVarLibDirListing: ['debian-5.7.flag', 'ib_logfile1', 'peatio_test', 'auto.cnf', 'performance_schema', 'ib_logfile0', 'barong_test', 'peatio_production', 'peatio_local01', 'ib_buffer_pool', 'mysql', 'peatio_local04', 'sys', 'peatio_development', 'peatio_production01', 'ibdata1', 'barong_development', 'ibtmp1', 'peatio_local02', 'mysql_upgrade_info', 'peatio_local03', 'barong_production']
ProcCmdline: BOOT_IMAGE=/boot/vmlinuz-4.15.0-36-generic root=UUID=e549b231-3cb6-4915-b7f3-13d9cb1d4237 ro quiet splash vt.handoff=1
Python3Details: /usr/bin/python3.6, Python 3.6.6, python3-minimal, 3.6.5-3ubuntu1
PythonDetails: /usr/bin/python2.7, Python 2.7.15rc1, python-minimal, 2.7.15~rc1-1
RelatedPackageVersions:
dpkg 1.19.0.5ubuntu2
apt 1.6.3ubuntu0.1
SourcePackage: mysql-5.7
Title: package mysql-server-5.7 5.7.24-0ubuntu0.18.04.1 failed to install/upgrade: installed mysql-server-5.7 package post-installation script subprocess returned error exit status 1
UpgradeStatus: No upgrade log present (probably fresh install)
modified.conffile..etc.mysql.mysql.conf.d.mysqld.cnf: [modified]
mtime.conffile..etc.mysql.mysql.conf.d.mysqld.cnf: 2018-09-04T15:26:53.075726

Tags:

Revision history for this message

leyb weg (leybweg) wrote on 2018-11-13:

.etc.apparmor.d.usr.sbin.mysqld.txt Edit (1.5 KiB, text/plain; charset="utf-8")
Dependencies.txt Edit (2.3 KiB, text/plain; charset="utf-8")
Df.txt Edit (3.0 KiB, text/plain; charset="utf-8")
Dmesg.txt Edit (219.2 KiB, text/plain; charset="utf-8")
DpkgHistoryLog.txt Edit (9.7 KiB, text/plain; charset="utf-8")
DpkgTerminalLog.txt Edit (1.7 KiB, text/plain; charset="utf-8")
KernLog.txt Edit (137.4 KiB, text/plain; charset="utf-8")
Logs.var.log.mysql.error.log.txt Edit (5.2 MiB, text/plain; charset="utf-8")
MySQLConf.etc.mysql.my.cnf.txt Edit (682 bytes, text/plain; charset="utf-8")
MySQLConf.etc.mysql.mysql.cnf.txt Edit (682 bytes, text/plain; charset="utf-8")
MySQLConf.etc.mysql.mysql.conf.d.mysqld.cnf.txt Edit (3.0 KiB, text/plain; charset="utf-8")
ProcCpuinfoMinimal.txt Edit (1.2 KiB, text/plain; charset="utf-8")

Revision history for this message

Karl Stenerud (kstenerud) wrote on 2018-11-14:

Hi leyb,

Looking in the logs, mysql is failing because it can't obtain a lockfile:

2018-11-13T14:17:06.265515Z 0 [ERROR] InnoDB: Unable to lock ./ibdata1 error: 11
2018-11-13T14:17:06.265584Z 0 [Note] InnoDB: Check that you do not already have another mysqld process using the same InnoDB data or log files.
2018-11-13T14:17:06.265618Z 0 [Note] InnoDB: Unable to open the first data file
2018-11-13T14:17:06.265652Z 0 [ERROR] InnoDB: Operating system error number 11 in a file operation.
2018-11-13T14:17:06.265673Z 0 [ERROR] InnoDB: Error number 11 means 'Resource temporarily unavailable'
2018-11-13T14:17:06.265687Z 0 [Note] InnoDB: Some operating system error numbers are described at http://dev.mysql.com/doc/refman/5.7/en/operating-system-error-codes.html
2018-11-13T14:17:06.265701Z 0 [ERROR] InnoDB: Cannot open datafile './ibdata1'
2018-11-13T14:17:06.265738Z 0 [ERROR] InnoDB: Could not open or create the system tablespace. If you tried to add new data files to the system tablespace, and it failed here, you should now edit innodb_data_file_path in my.cnf back to what it was, and remove the new ibdata files InnoDB created in this failed attempt. InnoDB only wrote those files full of zeros, but did not yet use them in any way. But be careful: do not remove old data files which contain your precious data!
2018-11-13T14:17:06.265753Z 0 [ERROR] InnoDB: Plugin initialization aborted with error Cannot open a file

Please make sure there aren't other instances accessing that file, and that its permissions are correct. Another cause could be an unclean shutdown.

Changed in mysql-5.7 (Ubuntu):
status:	New → Incomplete

Revision history for this message

Launchpad Janitor (janitor) wrote on 2019-01-14:

[Expired for mysql-5.7 (Ubuntu) because there has been no activity for 60 days.]

Changed in mysql-5.7 (Ubuntu):
status:	Incomplete → Expired

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Ubuntumysql-5.7 package

package mysql-server-5.7 5.7.24-0ubuntu0.18.04.1 failed to install/upgrade: installed mysql-server-5.7 package post-installation script subprocess returned error exit status 1

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Ubuntu
mysql-5.7 package