HDFView does not show file contents

Bug #1749448 reported by Arto Teräs
This bug report is a duplicate of:  Bug #1696456: HDF5 files appear empty. Edit Remove
16
This bug affects 3 people
Affects Status Importance Assigned to Milestone
hdf5 (Ubuntu)
Confirmed
Undecided
Unassigned

Bug Description

I've installed the HDFView program to view HDF5 files. The program starts and allows me to open a file, but does not show anything about the contents and structure of the file. As test files, I used samples from the HDF Group:

https://support.hdfgroup.org/ftp/HDF5/examples/files/exbyapi/h5ex_d_alloc.h5
https://support.hdfgroup.org/ftp/HDF5/examples/files/exbyapi/h5ex_d_checksum.h5

When I launch hdfview from the terminal, the program starts but produces an warning which may be related to the problem:
[warning] /usr/bin/hdfview: No java runtime was found
When choosing Help / Java version inside the program, it reports:
Compiled at jdk 1.7, Running at 9-Ubuntu

I have installed the openjdk-8-jre package and java --version reports:
openjdk 9-Ubuntu
OpenJDK Runtime Environment (build 9-Ubuntu+0-9b181-4)
OpenJDK 64-Bit Server VM (build 9-Ubuntu+0-9b181-4, mixed mode)

Ubuntu release: 17.10
Package version: apt-cache policy hdfview
hdfview:
  Installed: 2.11.0+dfsg-2build1
  Candidate: 2.11.0+dfsg-2build1
  Version table:
 *** 2.11.0+dfsg-2build1 500
        500 http://de.archive.ubuntu.com/ubuntu artful/universe amd64 Packages
        100 /var/lib/dpkg/status

The same problem is described in this Askubuntu discussion thread:
https://askubuntu.com/questions/907159/hdfview-working-in-ubuntu-17-04

I am using the same workaround, HDFView-3.0.0. downloaded directly from HDF Group site. That works, and HDFCompass (from Ubuntu package hdf-compass) works too.

Revision history for this message
Arto Teräs (ajt-iki) wrote :

Just noticed that this is probably a duplicate of this bug:
https://bugs.launchpad.net/ubuntu/+source/jhdf/+bug/1696456

Revision history for this message
Launchpad Janitor (janitor) wrote :

Status changed to 'Confirmed' because the bug affects multiple users.

Changed in hdf5 (Ubuntu):
status: New → Confirmed
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