Source package autodock-vina does not build in Ubuntu 15.10

[mirix]

In Ubuntu 14.04 one could build the source package autodock-vina by following these instructions:

https://help.ubuntu.com/community/UpdatingADeb

In Ubuntu 15.10 he compilation fails with the following errors:

$ debuild -us -uc -i -I
 dpkg-buildpackage -rfakeroot -D -us -uc -i -I
dpkg-buildpackage: source package autodock-vina
dpkg-buildpackage: source version 1.1.2-3build2
dpkg-buildpackage: source distribution wily
dpkg-buildpackage: source changed by Dimitri John Ledkov <email address hidden>
 dpkg-source -i -I --before-build autodock-vina-1.1.2
dpkg-buildpackage: host architecture amd64
 fakeroot debian/rules clean
dh clean
   dh_testdir
   dh_auto_clean
   debian/rules override_dh_clean
make[1]: Entering directory '/home/administrator/src/autodock-vina-1.1.2'
dh_clean
rm -f build/linux/release/*.o build/linux/release/vina*
make[1]: Leaving directory '/home/administrator/src/autodock-vina-1.1.2'
 dpkg-source -i -I -b autodock-vina-1.1.2
dpkg-source: info: using source format '3.0 (quilt)'
dpkg-source: info: building autodock-vina using existing ./autodock-vina_1.1.2.orig.tar.gz
dpkg-source: info: building autodock-vina in autodock-vina_1.1.2-3build2.debian.tar.xz
dpkg-source: info: building autodock-vina in autodock-vina_1.1.2-3build2.dsc
 debian/rules build
make: 'build' is up to date.
 fakeroot debian/rules binary
dh binary
   dh_testdir
   dh_auto_configure
   debian/rules override_dh_auto_build
make[1]: Entering directory '/home/administrator/src/autodock-vina-1.1.2'
/usr/bin/make BASE=/usr -C build/linux/release CLFAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto" CXXFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto" LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro --lto"
make[2]: Entering directory '/home/administrator/src/autodock-vina-1.1.2/build/linux/release'
g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -I /usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -I ../../../src/lib -o main.o -c ../../../src/main/main.cpp
In file included from /usr/include/pthread.h:24:0,
                 from /usr/include/x86_64-linux-gnu/c++/5/bits/gthr-default.h:35,
                 from /usr/include/x86_64-linux-gnu/c++/5/bits/gthr.h:148,
                 from /usr/include/c++/5/ext/atomicity.h:35,
                 from /usr/include/c++/5/bits/ios_base.h:39,
                 from /usr/include/c++/5/ios:42,
                 from /usr/include/c++/5/ostream:38,
                 from /usr/include/c++/5/iostream:39,
                 from ../../../src/main/main.cpp:23:
/usr/local/include/boost/thread/xtime.hpp:23:5: error: expected identifier before numeric constant
     TIME_UTC=1
     ^
/usr/local/include/boost/thread/xtime.hpp:23:5: error: expected ‘}’ before numeric constant
/usr/local/include/boost/thread/xtime.hpp:23:5: error: expected unqualified-id before numeric constant
In file included from /usr/local/include/boost/thread/pthread/mutex.hpp:13:0,
                 from /usr/local/include/boost/thread/mutex.hpp:16,
                 from /usr/local/include/boost/thread/pthread/thread_data.hpp:12,
                 from /usr/local/include/boost/thread/thread.hpp:17,
                 from ../../../src/main/main.cpp:32:
/usr/local/include/boost/thread/xtime.hpp:46:14: error: expected type-specifier before ‘system_time’
     operator system_time() const
              ^
In file included from /usr/local/include/boost/thread/pthread/mutex.hpp:13:0,
                 from /usr/local/include/boost/thread/mutex.hpp:16,
                 from /usr/local/include/boost/thread/pthread/thread_data.hpp:12,
                 from /usr/local/include/boost/thread/thread.hpp:17,
                 from ../../../src/main/main.cpp:32:
/usr/local/include/boost/thread/xtime.hpp: In function ‘int xtime_get(xtime*, int)’:
/usr/local/include/boost/thread/xtime.hpp:73:40: error: ‘get_system_time’ was not declared in this scope
         *xtp=get_xtime(get_system_time());
                                        ^
/usr/local/include/boost/thread/xtime.hpp:73:40: note: suggested alternative:
In file included from /usr/local/include/boost/thread/locks.hpp:12:0,
                 from /usr/local/include/boost/thread/pthread/mutex.hpp:11,
                 from /usr/local/include/boost/thread/mutex.hpp:16,
                 from /usr/local/include/boost/thread/pthread/thread_data.hpp:12,
                 from /usr/local/include/boost/thread/thread.hpp:17,
                 from ../../../src/main/main.cpp:32:
/usr/local/include/boost/thread/thread_time.hpp:18:24: note: ‘boost::get_system_time’
     inline system_time get_system_time()
                        ^
In file included from /usr/local/include/boost/thread/pthread/mutex.hpp:13:0,
                 from /usr/local/include/boost/thread/mutex.hpp:16,
                 from /usr/local/include/boost/thread/pthread/thread_data.hpp:12,
                 from /usr/local/include/boost/thread/thread.hpp:17,
                 from ../../../src/main/main.cpp:32:
/usr/local/include/boost/thread/xtime.hpp: At global scope:
/usr/local/include/boost/thread/xtime.hpp:88:1: error: expected declaration before ‘}’ token
 } // namespace boost
 ^
../../makefile_common:24: recipe for target 'main.o' failed
make[2]: *** [main.o] Error 1
make[2]: Leaving directory '/home/administrator/src/autodock-vina-1.1.2/build/linux/release'
debian/rules:17: recipe for target 'override_dh_auto_build' failed
make[1]: *** [override_dh_auto_build] Error 2
make[1]: Leaving directory '/home/administrator/src/autodock-vina-1.1.2'
debian/rules:14: recipe for target 'binary' failed
make: *** [binary] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary gave error exit status 2
debuild: fatal error at line 1374:
dpkg-buildpackage -rfakeroot -D -us -uc -i -I failed

[mirix (miromoman)]

Sorry, this was a problem with my particular setup and not a general bug. I had installed an older version of Boost. Removing that version fixes the problem.