Please backport concavity 0.1-2 (universe) from raring

Bug #1165011 reported by Sasa Paporovic
8
This bug affects 1 person
Affects Status Importance Assigned to Milestone
Precise Backports
Fix Released
Undecided
Unassigned
Quantal Backports
Fix Released
Undecided
Unassigned

Bug Description

Please backport concavity 0.1-2 (universe) from raring to quantal and precise.

Reason for the backport:
========================
One of the major issues for drug development in any way is to have a clue what kind of substances could bound to a protein.
For in silico prediction on this(e.g. with AutoDock) it is helpfull to reduce the protein surface to just
that parts where an interaction is possible at all. This are the ligand binding sides of a protein.
That is where concavity fits. It arises a precision up to 80%, which is remarkable more that other
programs/algorithms archive. The most establisched ones are arround 60% precision is ligand binding side prediction.
So, concavity makes a remarkable advance in this area and should be brought to those parts of the community who reside on stable release Quantal and LTS Precise.

Testing:
========
Mark off items in the checklist [X] as you test them, but please leave the checklist so that backporters can quickly evaluate the state of testing.

You can test-build the backport in your PPA with backportpackage:
$ backportpackage -u ppa:<lp username>/<ppa name> -s raring -d quantal concavity

* quantal:
[x] Package builds without modification
[x] concavity installs cleanly and runs
[x] concavity-dbg installs cleanly and runs

*precise:
[x] Package builds without notification
[x] concavity installs cleanly and runs
[x] concavity-dbg installs cleanly and runs

No reverse dependencies

Changed in precise-backports:
status: New → Confirmed
Changed in quantal-backports:
status: New → Confirmed
Revision history for this message
Sasa Paporovic (melchiaros) wrote :

I have figured out how to handle with backporting script and pbuilder.

The build for quantal and precise run with success to the end. The binary packages for Quantal and Precise are now there, and also the -dbg packages for Quantal and Precise.

A testinstallation on Quantal is already performed and Precise is pendig, but should be tested until the evening.

I adapt the bug desription to this.

description: updated
Changed in precise-backports:
status: Confirmed → New
Revision history for this message
Sasa Paporovic (melchiaros) wrote :

A testinstallation of the binary and debug packages builded in pbuilder for Ubuntu12.04 is now also performed on Ubuntu12.04.

A function test was also successfull.

The summary of this report will be adapted to this.

description: updated
Revision history for this message
Sasa Paporovic (melchiaros) wrote :

Refering to the

https://wiki.ubuntu.com/UbuntuBackports

the status for the Precise backport will be set to confirmed.

Changed in precise-backports:
status: New → Confirmed
Revision history for this message
Felix Geyer (debfx) wrote :

Accepted into backports.

Changed in precise-backports:
status: Confirmed → Fix Released
Changed in quantal-backports:
status: Confirmed → Fix Released
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