emboss version 6.3.1-6ubuntu4 failed to build with openjdk-7 as default-jdk

[James Page]

During a rebuild test with default-jdk switched to openjdk-7 (as it is in quantal), a build failure was detected for emboss version 6.3.1-6ubuntu4.

See attached log for full build failure details.

https://wiki.ubuntu.com/JavaTeam/Java7Default contains more details of how to diagnose and resolve these types of issues.

This log snippet might also be of interest:

make[3]: Leaving directory `/«PKGBUILDDIR»/doc/tutorials'
make[3]: Entering directory `/«PKGBUILDDIR»/doc'
make[3]: Nothing to be done for `all-am'.
make[3]: Leaving directory `/«PKGBUILDDIR»/doc'
make[2]: Leaving directory `/«PKGBUILDDIR»/doc'
Making all in jemboss
make[2]: Entering directory `/«PKGBUILDDIR»/jemboss'
Making all in images
make[3]: Entering directory `/«PKGBUILDDIR»/jemboss/images'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/«PKGBUILDDIR»/jemboss/images'
Making all in lib
make[3]: Entering directory `/«PKGBUILDDIR»/jemboss/lib'
Making all in axis
make[4]: Entering directory `/«PKGBUILDDIR»/jemboss/lib/axis'
make[4]: Nothing to be done for `all'.
make[4]: Leaving directory `/«PKGBUILDDIR»/jemboss/lib/axis'
make[4]: Entering directory `/«PKGBUILDDIR»/jemboss/lib'
make[4]: Nothing to be done for `all-am'.
make[4]: Leaving directory `/«PKGBUILDDIR»/jemboss/lib'
make[3]: Leaving directory `/«PKGBUILDDIR»/jemboss/lib'
Making all in resources
make[3]: Entering directory `/«PKGBUILDDIR»/jemboss/resources'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/«PKGBUILDDIR»/jemboss/resources'
Making all in utils
make[3]: Entering directory `/«PKGBUILDDIR»/jemboss/utils'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/«PKGBUILDDIR»/jemboss/utils'
make[3]: Entering directory `/«PKGBUILDDIR»/jemboss'
make[3]: Nothing to be done for `all-am'.
make[3]: Leaving directory `/«PKGBUILDDIR»/jemboss'
make[2]: Leaving directory `/«PKGBUILDDIR»/jemboss'
make[2]: Entering directory `/«PKGBUILDDIR»'
make[2]: Nothing to be done for `all-am'.
make[2]: Leaving directory `/«PKGBUILDDIR»'
make[1]: Leaving directory `/«PKGBUILDDIR»'
touch build-stamp
 fakeroot debian/rules binary
dh_testdir
dh_autoreconf
dh_autoreconf: Can only be run once, see dh-autoreconf(7)
make: *** [config.status] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary gave error exit status 2
────────────────────────────────────────────────────────────────────────────────
Build finished at 20120602-0045

Finished
────────

E: Build failure (dpkg-buildpackage died)