Galaxy export error

Bug #1064943 reported by Simon Wagstaff
6
This bug affects 1 person
Affects Status Importance Assigned to Milestone
Bio-Linux
Triaged
Low
Unassigned

Bug Description

Following error received from the History pane, options, export to file. This does not happen with all histories - this happens to be a long RNASeq workflow. I have a feeling this may have been resolved in a recent update of the core package but I can't be certain and can't find the link.

Error Traceback:

View as: Interactive | Text | XML (full)
⇝ AttributeError: 'NoneType' object has no attribute 'hid'
URL: http://localhost:8080/history/export_archive
Module weberror.evalexception.middleware:364 in respond view
>> app_iter = self.application(environ, detect_start_response)
Module paste.debug.prints:98 in __call__ view
>> environ, self.app)
Module paste.wsgilib:539 in intercept_output view
>> app_iter = application(environ, replacement_start_response)
Module paste.recursive:80 in __call__ view
>> return self.application(environ, start_response)
Module paste.httpexceptions:632 in __call__ view
>> return self.application(environ, start_response)
Module galaxy.web.framework.base:160 in __call__ view
>> body = method( trans, **kwargs )
Module galaxy.web.controllers.history:679 in export_archive view
>> history_exp_tool.execute( trans, incoming = params, set_output_hid = True )
Module galaxy.tools:1661 in execute view
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions.history_imp_exp:108 in execute view
>> include_deleted=incoming[ 'include_deleted' ] )
Module galaxy.tools.imp_exp:419 in setup_job view
>> input_datasets = [ assoc.dataset.hid for assoc in job.input_datasets ]
AttributeError: 'NoneType' object has no attribute 'hid'

Revision history for this message
Tim Booth (tbooth) wrote :

Hopefully will be solved by a Galaxy server update

Changed in bio-linux:
importance: Undecided → Low
status: New → Triaged
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