diff -Nru gnome-shell-3.6.2/debian/changelog gnome-shell-3.6.2/debian/changelog
--- gnome-shell-3.6.2/debian/changelog	2012-12-18 22:39:02.000000000 +1100
+++ gnome-shell-3.6.2/debian/changelog	2013-01-31 14:54:01.000000000 +1100
@@ -1,3 +1,10 @@
+gnome-shell (3.6.2-0ubuntu5) raring; urgency=low
+
+  * Upstream bugfix for disappearing notifications (LP: #1088759)
+    debian/patches/git_messagetray_hideNotification_.patch
+
+ -- Tim Lunn <tim@feathertop.org>  Thu, 31 Jan 2013 14:53:11 +1100
+
 gnome-shell (3.6.2-0ubuntu4) raring; urgency=low
 
   * Upstream bugfix for disappearing notifications (LP: #1088759)
diff -Nru gnome-shell-3.6.2/debian/patches/git_messagetray_hideNotification.patch gnome-shell-3.6.2/debian/patches/git_messagetray_hideNotification.patch
--- gnome-shell-3.6.2/debian/patches/git_messagetray_hideNotification.patch	1970-01-01 10:00:00.000000000 +1000
+++ gnome-shell-3.6.2/debian/patches/git_messagetray_hideNotification.patch	2013-01-31 14:52:57.000000000 +1100
@@ -0,0 +1,56 @@
+From 1fa2447541875b2b30fd4442d8190b147e28b5b2 Mon Sep 17 00:00:00 2001
+From: Giovanni Campagna <gcampagna@src.gnome.org>
+Date: Sat, 22 Dec 2012 16:02:19 +0100
+Subject: [PATCH] MessageTray: fix reentrancy problem in
+ hideNotificationCompleted
+
+Hiding notificationWidget with a telepathy notification causes
+unfocused to be emitted, which causes a reentrant updateState.
+If another notification is queued, it is shown before the old
+one is cleared.
+
+https://bugzilla.gnome.org/show_bug.cgi?id=683986
+---
+ js/ui/messageTray.js | 17 ++++++++++-------
+ 1 file changed, 10 insertions(+), 7 deletions(-)
+
+--- a/js/ui/messageTray.js
++++ b/js/ui/messageTray.js
+@@ -2171,7 +2171,7 @@
+                                                               Lang.bind(this, this._onIdleMonitorWatch));
+         this._notificationClickedId = this._notification.connect('done-displaying',
+                                                                  Lang.bind(this, this._escapeTray));
+-        this._notification.connect('unfocused', Lang.bind(this, function() {
++        this._notificationUnfocusedId = this._notification.connect('unfocused', Lang.bind(this, function() {
+             this._updateState();
+         }));
+         this._notificationBin.child = this._notification.actor;
+@@ -2293,19 +2293,22 @@
+     },
+ 
+     _hideNotificationCompleted: function() {
+-        this._notificationRemoved = false;
+-        this._notificationWidget.hide();
+-        this._closeButton.hide();
+-        this._pointerInTray = false;
+-        this.actor.hover = false; // Clutter doesn't emit notify::hover when actors move
+-        this._notificationBin.child = null;
+         this._notification.collapseCompleted();
+         this._notification.disconnect(this._notificationClickedId);
+         this._notificationClickedId = 0;
++        this._notification.disconnect(this._notificationUnfocusedId);
++        this._notificationUnfocusedId = 0;
+         let notification = this._notification;
+         this._notification = null;
+         if (notification.isTransient)
+             notification.destroy(NotificationDestroyedReason.EXPIRED);
++
++        this._notificationRemoved = false;
++        this._closeButton.hide();
++        this._pointerInTray = false;
++        this.actor.hover = false; // Clutter doesn't emit notify::hover when actors move
++        this._notificationBin.child = null;
++        this._notificationWidget.hide();
+     },
+ 
+     _expandNotification: function(autoExpanding) {
diff -Nru gnome-shell-3.6.2/debian/patches/series gnome-shell-3.6.2/debian/patches/series
--- gnome-shell-3.6.2/debian/patches/series	2012-12-18 22:39:02.000000000 +1100
+++ gnome-shell-3.6.2/debian/patches/series	2013-01-31 14:52:34.000000000 +1100
@@ -9,3 +9,4 @@
 git_messagetray_opacity_fix.patch
 git_messagetray_remove_tweens.patch
 git_messagetray_fix_expansion.patch
+git_messagetray_hideNotification.patch