Sync fsl 4.1.6-1 (multiverse) from Debian unstable (non-free)
Affects | Status | Importance | Assigned to | Milestone | |
---|---|---|---|---|---|
fsl (Ubuntu) |
Fix Released
|
Wishlist
|
Unassigned |
Bug Description
Please sync fsl 4.1.6-1 (multiverse) from Debian unstable (non-free)
Explanation of the Ubuntu delta and why it can be dropped:
The current delta is related to Debian bug http://
Changelog entries since current maverick version 4.1.4-2ubuntu1:
fsl (4.1.6-1) unstable; urgency=low
* New upstream release. Merged various patches with upstream.
Closes: #581095.
-- Michael Hanke <email address hidden> Mon, 05 Jul 2010 10:44:16 -0400
fsl (4.1.5.2-3) unstable; urgency=low
* Switch to source package format 3.0 (quilt). Convert all Git
feature/bugfix branches into quilt patch series.
* Remove obsolete dh_desktop call from debian/rules.
* Add debhelper dependency variables to fsl-doc control stanza.
* No longer compile with '-Wl,--as-needed' to prevent symbols from
libcprob to be substituted by external replacements.
* Updated and extended the package description.
* Changed maintainer to NeuroDebian. Moved myself into uploaders and
added Yaroslav Halchenko.
* Fix syntax error in 'rotate_bvecs' script.
-- Michael Hanke <email address hidden> Sun, 02 May 2010 19:19:25 -0400
fsl (4.1.5.2-2) unstable; urgency=low
* Fix broken fslmaths option (-tfce). Thanks to Clark Johnson and Matthew
Webster.
* Bumped Standard version to 3.8.4.0 -- no changes necessary.
* Remove support for octave2.1 dependency and allow for octave3.2.
Thanks to Thomas Weber for the report (Closes: #572763).
-- Michael Hanke <email address hidden> Sat, 06 Mar 2010 08:28:38 -0500
fsl (4.1.5.2-1) unstable; urgency=low
* New upstream service release. Fixes issues with broken FNIRT scripts.
* Include `fslecho` script in the binary package (Closes: #567133). Thanks to
Petr Hlustík for reporting.
-- Michael Hanke <email address hidden> Thu, 28 Jan 2010 09:27:57 -0500
fsl (4.1.5-1) unstable; urgency=low
* New upstream release.
* An issue with Randomise "pausing" has been fixed.
* There are some improvements to the bedpostx monitor script.
* Large speedup for invwarp by automatically adjusting the useful FOV
internally (no cropping of the original images needed).
* Non-linear initialisation in bedpostx to allow better convergence of
the MCMC chains
* Some improvements and new options in Probtrackx:
- allows to input nonlinear (FNIRT) warpfield instead of FLIRT
matrices
- bug fix in initial fibre selection
- tracking from freesurfer cortical surface (into the brain)
- tracking from random locations within a seed voxel
* No longer compile with '-ansi -pedantic', since a significant part of the
sources is actually not ANSI compliant (Closes: #546003).
* Don't use roundl() to round doubles in src/basisfield/
prevent FTFBS on ARMEL (Closes: #513272).
* Bumped Standard version to 3.8.3.0 -- no changes necessary.
* New config variable FSLPARALLEL. If set, FSL will submit jobs to a running
Sun Gridengine. By default, this setting is disabled in /etc/fsl/fsl.sh.
(Closes: #546238). Added suggested package 'gridengine-
See README.Debian for more information.
* Remove all menu items of GUI-apps that are directly accessible from the
central FSL GUI. The menu got too crowded with all the different FSL
items.
-- Michael Hanke <email address hidden> Fri, 22 Jan 2010 18:01:24 -0500
Changed in fsl (Ubuntu): | |
importance: | Undecided → Wishlist |
This bug was fixed in the package fsl - 4.1.6-1
---------------
fsl (4.1.6-1) unstable; urgency=low
* New upstream release. Merged various patches with upstream.
Closes: #581095.
fsl (4.1.5.2-3) unstable; urgency=low
* Switch to source package format 3.0 (quilt). Convert all Git
feature/bugfix branches into quilt patch series.
* Remove obsolete dh_desktop call from debian/rules.
* Add debhelper dependency variables to fsl-doc control stanza.
* No longer compile with '-Wl,--as-needed' to prevent symbols from
libcprob to be substituted by external replacements.
* Updated and extended the package description.
* Changed maintainer to NeuroDebian. Moved myself into uploaders and
added Yaroslav Halchenko.
* Fix syntax error in 'rotate_bvecs' script.
fsl (4.1.5.2-2) unstable; urgency=low
* Fix broken fslmaths option (-tfce). Thanks to Clark Johnson and Matthew
Webster.
* Bumped Standard version to 3.8.4.0 -- no changes necessary.
* Remove support for octave2.1 dependency and allow for octave3.2.
Thanks to Thomas Weber for the report (Closes: #572763).
fsl (4.1.5.2-1) unstable; urgency=low
* New upstream service release. Fixes issues with broken FNIRT scripts.
* Include `fslecho` script in the binary package (Closes: #567133). Thanks to
Petr Hlustík for reporting.
fsl (4.1.5-1) unstable; urgency=low
* New upstream release. splinefield. cpp to client' .
* An issue with Randomise "pausing" has been fixed.
* There are some improvements to the bedpostx monitor script.
* Large speedup for invwarp by automatically adjusting the useful FOV
internally (no cropping of the original images needed).
* Non-linear initialisation in bedpostx to allow better convergence of
the MCMC chains
* Some improvements and new options in Probtrackx:
- allows to input nonlinear (FNIRT) warpfield instead of FLIRT
matrices
- bug fix in initial fibre selection
- tracking from freesurfer cortical surface (into the brain)
- tracking from random locations within a seed voxel
* No longer compile with '-ansi -pedantic', since a significant part of the
sources is actually not ANSI compliant (Closes: #546003).
* Don't use roundl() to round doubles in src/basisfield/
prevent FTFBS on ARMEL (Closes: #513272).
* Bumped Standard version to 3.8.3.0 -- no changes necessary.
* New config variable FSLPARALLEL. If set, FSL will submit jobs to a running
Sun Gridengine. By default, this setting is disabled in /etc/fsl/fsl.sh.
(Closes: #546238). Added suggested package 'gridengine-
See README.Debian for more information.
* Remove all menu items of GUI-apps that are directly accessible from the
central FSL GUI. The menu got too crowded with all the different FSL
items.
-- Artur Rona <email address hidden> Mon, 05 Jul 2010 10:44:16 -0400